Clone BS21718 Report

Search the DGRC for BS21718

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:217
Well:18
Vector:pDNR-Dual
Associated Gene/TranscriptCG13577-RB
Protein status:BS21718.pep: full length peptide match
Sequenced Size:1346

Clone Sequence Records

BS21718.complete Sequence

1346 bp assembled on 2011-06-14

GenBank Submission: KX802746

> BS21718.complete
GAAGTTATCAGTCGACATGTCAAAGCGCTGCTGGAACCGCAACCAGCGCT
CGGTGTCCCTGCCCAGGAGCGAATTCGTCGAAATAAACCCCATGATGCCC
GGCAGGAGCACCGCAGCTGAAGGCGCACGCGGGAGAGCATCATCCGGACC
TCGGATGACCGTGGAGACCCTGTTCCATACTTCTCACTCGGCGAAGAAGG
AGCGTCCACAGCAGGGTGCAAAACCCATGGAAAACCGAGTTTTGAAGGAA
AGCTCCACGTCTAAGAATTCGCGTGAGATGCCTTCTCTGCTACTCTCCAC
CAAGGGCAGGCCAGATGGCACTTGGAATAATATGAGAGCCAAGGAAAACA
AGCAGCATCGCAAAGAAGGGAGTCGCCACCTGGCTGCAACTTCCACGATG
CCCAAGATGGATGAGCTTGGACCCGACTGGCGAAAACCTTGGCCGATCGG
CGGTTTTTCTCGGAATAATCGTAGTAGCCCTCAGATGTTCAGTACAGTTC
CTTCGAAAAGTTCTGTTAACATTTCAAGAGACAACAACAATTATCCCGAT
TTAAAAATAGAAGACACTGGGAAAAAGAGCCACACAGTCACAGGAAAGGC
ACCGAACACGCGTGCAGAAGATCAAAGGTCAGGAATGGTGGCCCATCTAA
GCGGTCTAAATAGCAAGACTAAGCACACGAGGCTGATGAGTACTTCCAAG
CGCTGCAAAGCAGGTTCGGAAGATTCTGTTTACCATCAGACCCTGAATGA
TGTCATCTCCCAGTGGGATTGCCAGCCGTCGACCAGTAAAAGTAATCCAT
GCCAGATTCCGAAGATTCCGAATCTGCCGTCCGGATGGACAGCTTCGCCG
AGCAAAGACGCGGACTTCCCTTTCATGGCGGATCTGGAAAATAGGATGGG
GGTCGAAAGTCTGATGCCCGAGCTGCTGACTCCATCGCGCACCTCCCAGC
CGCTGACAAAGAATTCTCCGCCTTGGGACTTGTATGCCTTGATGGGCAAC
GACGACAAATTTCCGCTTAGCATCTGCACCGATGAGAGATCCAAAAATGA
TCCATTGTGGGGCTCCACTTGCATTAACTGGGAAGAAAGCAGCGGCAGGA
ACTTGGACTTGAACCACGTCTGCGAGAGGGCCTTGGGAAAATTCCCAGGC
CCATCTGCTACTCCGGGAAACGTGGAAGATTGGCAGGCCATCGAGACTAT
TTGCATGCGTTTGAGGGGCTTCGATATGCCGGGCGACCTGGGTGTTCTGA
TGGAACCTCCATCCTTGGATGATGTACTCGAGGTTATCGGGGACTTGGAG
GCGGAGAACAAGAAGGATCTGAAGAATTAGAAGCTTTCTAGACCAT

BS21718.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:37:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG13577-RB 1314 CG13577-PB 1..1314 17..1330 6570 100 Plus
CG13577-RC 696 CG13577-PC 1..696 635..1330 3480 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:37:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG13577-RB 1744 CG13577-RB 88..1401 17..1330 6570 100 Plus
CG13577-RC 906 CG13577-RC 1..840 491..1330 4200 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:37:41
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24267720..24269031 1330..19 6560 100 Minus
Blast to na_te.dros performed on 2014-11-26 14:37:42 has no hits.

BS21718.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-14 17:47:19 Download gff for BS21718.complete
Subject Subject Range Query Range Percent Splice Strand
CG13577-RB 72..1385 17..1330 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:38:59 Download gff for BS21718.complete
Subject Subject Range Query Range Percent Splice Strand
CG13577-RB 88..1401 17..1330 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:56:56 Download gff for BS21718.complete
Subject Subject Range Query Range Percent Splice Strand
CG13577-RB 88..1401 17..1330 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:56:56 Download gff for BS21718.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24267720..24269032 17..1330 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:38:59 Download gff for BS21718.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20155243..20156555 17..1330 99   Minus

BS21718.pep Sequence

Translation from 16 to 1329

> BS21718.pep
MSKRCWNRNQRSVSLPRSEFVEINPMMPGRSTAAEGARGRASSGPRMTVE
TLFHTSHSAKKERPQQGAKPMENRVLKESSTSKNSREMPSLLLSTKGRPD
GTWNNMRAKENKQHRKEGSRHLAATSTMPKMDELGPDWRKPWPIGGFSRN
NRSSPQMFSTVPSKSSVNISRDNNNYPDLKIEDTGKKSHTVTGKAPNTRA
EDQRSGMVAHLSGLNSKTKHTRLMSTSKRCKAGSEDSVYHQTLNDVISQW
DCQPSTSKSNPCQIPKIPNLPSGWTASPSKDADFPFMADLENRMGVESLM
PELLTPSRTSQPLTKNSPPWDLYALMGNDDKFPLSICTDERSKNDPLWGS
TCINWEESSGRNLDLNHVCERALGKFPGPSATPGNVEDWQAIETICMRLR
GFDMPGDLGVLMEPPSLDDVLEVIGDLEAENKKDLKN*

BS21718.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:11:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG13577-PB 437 CG13577-PB 1..437 1..437 2341 100 Plus
CG13577-PC 231 CG13577-PC 1..231 207..437 1252 100 Plus