Clone BS21724 Report

Search the DGRC for BS21724

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:217
Well:24
Vector:pDNR-Dual
Associated Gene/TranscriptCG12516-RB
Protein status:BS21724.pep: full length peptide match
Sequenced Size:935

Clone Sequence Records

BS21724.complete Sequence

935 bp assembled on 2011-02-01

GenBank Submission: KX804119

> BS21724.complete
GAAGTTATCAGTCGACATGATCAGCCCGGTAATAACTCGACAAATGGTGC
AAATCCTGCCAAGTGTTATGGTCGGTAGGATAACACTTCCCGATATTATT
GAGGATGCAATCAAGCCCCCAACGGAAGATATTAATTTCGAAGAAAAATC
GAATGAGAATGAGGTGGAAGATAATACAGAGAAATCGGAAGCGGTTTCTG
AATCCGAAAAAGAGGTAATTGAGGTATCTGAGGAGCCGAAGGAAGAAGAG
GTAAAGTACGCTTGGAATGCACCCTGCATGATGGTCATCTTCGAGGATGG
CGATGTCAATTGTGCCCTGCATCACCTGGTCGAATCTCTACAGGATCCCT
TTGCCTTAGATGCGGTTGCCGTGATCTTGGTACAAGAAGCTTTAGCCGAA
GAAATCGAAAACCGAGTAAAAATTCTGATGAAACCCTTGGATGCCAGGGT
GGCCAATCATCCGTGCTACAAGCGCACTCTGATGAAGATTGACGAACTTA
GGCCGAAAACTATAATAGGTCCTTCAGATCGTGTCTTACCCGATGCCACG
CCCATAATGGTGCGGGACATACCACACAAATTTCTGGGCGATGGACCCAC
TGGCATTATAACCATGCATATTTTTCGCACCCCTTTCGAAGCCACTCAGA
TATATAGAAAGGAATATCCCCTACCAATCGCATCGGTTAGTATATGGAAT
GAGCGGGTTTCGAGTGTTTACGATGTAATTGGCATGATGAATCTACTCGA
TACCTTTAAGATCAACTGTTTCACGGTCGATATGGAGCCCATTAAGCGGG
CATTCGAGCTAAGGAAGTATAGTGCTTGTATACATCGTGGTTATCACTAT
GAAACCCTGCCCATAAATGGCGAGAGAAAGATTATCATATATCCAGTTGG
AACTATATTTGGCAATTGAAAGCTTTCTAGACCAT

BS21724.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:47:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG12516-RB 903 CG12516-PB 1..903 17..919 4515 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:47:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG12516-RB 975 CG12516-RB 39..942 17..920 4520 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:47:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 28303664..28304567 920..17 4520 100 Minus
Blast to na_te.dros performed on 2014-11-27 00:47:56 has no hits.

BS21724.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-14 14:31:57 Download gff for BS21724.complete
Subject Subject Range Query Range Percent Splice Strand
CG12516-RB 39..940 17..918 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:34:24 Download gff for BS21724.complete
Subject Subject Range Query Range Percent Splice Strand
CG12516-RB 39..940 17..918 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:09:56 Download gff for BS21724.complete
Subject Subject Range Query Range Percent Splice Strand
CG12516-RB 39..940 17..918 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:09:56 Download gff for BS21724.complete
Subject Subject Range Query Range Percent Splice Strand
3R 28303666..28304567 17..918 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:34:24 Download gff for BS21724.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24129388..24130289 17..918 100   Minus

BS21724.pep Sequence

Translation from 16 to 918

> BS21724.pep
MISPVITRQMVQILPSVMVGRITLPDIIEDAIKPPTEDINFEEKSNENEV
EDNTEKSEAVSESEKEVIEVSEEPKEEEVKYAWNAPCMMVIFEDGDVNCA
LHHLVESLQDPFALDAVAVILVQEALAEEIENRVKILMKPLDARVANHPC
YKRTLMKIDELRPKTIIGPSDRVLPDATPIMVRDIPHKFLGDGPTGIITM
HIFRTPFEATQIYRKEYPLPIASVSIWNERVSSVYDVIGMMNLLDTFKIN
CFTVDMEPIKRAFELRKYSACIHRGYHYETLPINGERKIIIYPVGTIFGN
*

BS21724.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:05:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG12516-PB 300 CG12516-PB 1..300 1..300 1558 100 Plus
CG2336-PA 322 CG2336-PA 45..311 30..298 559 41.3 Plus
CG15717-PE 252 CG15717-PE 22..252 73..300 500 41.3 Plus
CG15717-PC 252 CG15717-PC 22..252 73..300 500 41.3 Plus
CG15717-PA 252 CG15717-PA 22..252 73..300 500 41.3 Plus