Clone BS21726 Report

Search the DGRC for BS21726

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:217
Well:26
Vector:pDNR-Dual
Associated Gene/TranscriptCG16790-RA
Protein status:BS21726.pep: full length peptide match
Sequenced Size:829

Clone Sequence Records

BS21726.complete Sequence

829 bp assembled on 2011-02-01

GenBank Submission: KX802175

> BS21726.complete
GAAGTTATCAGTCGACATGGCCCTGGTGGACTATGGTGGCAGCAGCTCCT
CCGCCTCCGAGGATGAGGACTGCACCGAAAACATTCAAACTCCCGCGTTG
ATCACCTTGAAAAGACCGGCCCTACCCAAAGCAGCCACCCTGCTGGGCCC
CAAGAAGCCCAAGCCCGAGGAGTTCGTCGAGGATGTGGTGGATGATCCCG
CGGAACATGGCGGCCGCATGCGTAGTTTCAAGCATGAACGGGGAAACTGG
GCCACTTACGTCTATGTGCCGGCAACAGCATGTGTTGACCAGCTGGAGGA
GTTCCAAACGGAGGCCATTGCTCGTCTGGAGCCACACTTGGAACTGCAGC
CGAACGAGTCGCTCCATCTGAGCCTGAGTCGAACAGTGGTGCTGCAGTAC
CATCAGATCGATGAATTCTCCCGATCCTTGCAAAGCGCCCTCAACAGCTC
TGCGGGATTCGCCGCCACTTTGCAGGGGCTGCGGATCTACACGAATGAGG
AGCGAACCAGGACCTTCATTGCTGCGCCCCTGGACGCTGCATTTGTGGAG
AAGATGACTGCCATTCTGCAGCCCATCGACCAAGTGATGCTCGACTACCG
GCTGCAACAGTTCTATGATCCGGCCTCGTTCCACGTCAGCCTTCTTTGGT
GCGTTGGCGACCAGGAGACACTGCTTAACGAAAAGCTCACGGAGTTAAAA
GAGCTCCTTGATGATCAGGACAAACTCTGCCTGGCGGTCAATGAGGTGCA
CCTAAAGTGCGGCAACAAGGATTTTACCTACTCGTTGAAATAGAAGCTTT
CTAGACCATTCGTTTGGCGCGCTAAACGG

BS21726.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:44:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG16790-RA 777 CG16790-PA 1..777 17..793 3885 100 Plus
CG16790-RB 159 CG16790-PB 1..159 17..195 560 88.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:44:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG16790-RA 1028 CG16790-RA 75..851 17..793 3885 100 Plus
CG16790-RB 1008 CG16790-RB 75..831 17..793 3550 97.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:44:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9569649..9569994 456..111 1730 100 Minus
3R 32079331 3R 9569251..9569588 793..456 1690 100 Minus
3R 32079331 3R 9570043..9570140 114..17 490 100 Minus
Blast to na_te.dros performed on 2014-11-26 21:44:40 has no hits.

BS21726.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-01 15:39:28 Download gff for BS21726.complete
Subject Subject Range Query Range Percent Splice Strand
CG16790-RA 75..857 17..799 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:35:21 Download gff for BS21726.complete
Subject Subject Range Query Range Percent Splice Strand
CG16790-RA 75..857 17..799 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:41:11 Download gff for BS21726.complete
Subject Subject Range Query Range Percent Splice Strand
CG16790-RA 75..857 17..799 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:41:11 Download gff for BS21726.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9569245..9569587 457..799 99 <- Minus
3R 9569649..9569990 115..456 100 <- Minus
3R 9570043..9570140 17..114 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:35:21 Download gff for BS21726.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5394967..5395309 457..799 99 <- Minus
arm_3R 5395371..5395712 115..456 100 <- Minus
arm_3R 5395765..5395862 17..114 100   Minus

BS21726.pep Sequence

Translation from 16 to 792

> BS21726.pep
MALVDYGGSSSSASEDEDCTENIQTPALITLKRPALPKAATLLGPKKPKP
EEFVEDVVDDPAEHGGRMRSFKHERGNWATYVYVPATACVDQLEEFQTEA
IARLEPHLELQPNESLHLSLSRTVVLQYHQIDEFSRSLQSALNSSAGFAA
TLQGLRIYTNEERTRTFIAAPLDAAFVEKMTAILQPIDQVMLDYRLQQFY
DPASFHVSLLWCVGDQETLLNEKLTELKELLDDQDKLCLAVNEVHLKCGN
KDFTYSLK*

BS21726.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:58:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG16790-PA 258 CG16790-PA 1..258 1..258 1333 100 Plus
CG16790-PB 52 CG16790-PB 1..48 1..47 170 77.1 Plus