BS21730.complete Sequence
659 bp assembled on 2011-02-01
GenBank Submission: KX804647
> BS21730.complete
GAAGTTATCAGTCGACATGGAGGACCATAATACAGCCAACCTGTCGGAGC
CAGCATCTCCAGCTAATTCTGTGGCATCCGCAGAAATTGCCGCCGAGTTC
GCTGCGCTTTCCGTCGAGGAGAAGGAGCAGCGTCGGGCTGAGTGGAGTCA
GGAGCTCGCCCGCGTTGAGGAAGAGATCAATACGCTGCGAACTGTCCTAG
CCTCCAAGACGCGCCATGCCTCCGATCTCAAGCGCAAGCTGGGCATCACC
GTCTGGAAGGAGGTGACGGACGACGTGAACCAGGGCCTTAAGAACCTCAA
GGAGAGCACTGTTTACCAATCGGTGGAGCAGAGCGTGGGCACGTTTACTA
AAACGGTGTACGAGGCACCACTATACCAACGCACTGAGTCGGTGCTAAAG
TCCACGGGCGAGAAGACCGCCTCGGTGTTTGGCAGCATCACCAGTGGCAT
TTCGTCGAAACTGTCGCAAATGAAAAACTCCGAATCGATGCGTTCTATCG
AGGCTTCGGTGGGCTCTGCCTACGAGAACGTTAAAACCAAGGTGACATCC
CGCTCGGGTTCGGTGTCCAGTTTCCCAGATGCCCTGGACGAGAATAACAC
ATCCTCGGGTCTGAATTCACCCACAGACTCACTCCCGAAATAGAAGCTTT
CTAGACCAT
BS21730.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:48:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5174-RA | 627 | CG5174-PA | 1..627 | 17..643 | 3135 | 100 | Plus |
| CG5174-RL | 630 | CG5174-PL | 14..630 | 27..643 | 3085 | 100 | Plus |
| CG5174-RB | 1068 | CG5174-PB | 452..1068 | 27..643 | 3085 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:48:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5174-RA | 1532 | CG5174-RA | 132..759 | 17..644 | 3140 | 100 | Plus |
| CG5174-RL | 981 | CG5174-RL | 145..762 | 27..644 | 3090 | 100 | Plus |
| CG5174-RB | 2195 | CG5174-RB | 805..1422 | 27..644 | 3090 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:48:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18424323..18424486 | 149..312 | 820 | 100 | Plus |
| 2R | 25286936 | 2R | 18424872..18425034 | 373..535 | 815 | 100 | Plus |
| 2R | 25286936 | 2R | 18424127..18424252 | 27..152 | 630 | 100 | Plus |
| 2R | 25286936 | 2R | 18425340..18425448 | 536..644 | 545 | 100 | Plus |
| 2R | 25286936 | 2R | 18424607..18424666 | 313..372 | 300 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 21:48:06 has no hits.
BS21730.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-01 15:39:31 Download gff for
BS21730.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5174-RA | 135..755 | 17..637 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:37:08 Download gff for
BS21730.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5174-RA | 132..752 | 17..637 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:42:37 Download gff for
BS21730.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5174-RA | 132..752 | 17..637 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:42:37 Download gff for
BS21730.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18424872..18425034 | 373..535 | 100 | -> | Plus |
| 2R | 18425340..18425441 | 536..637 | 100 | | Plus |
| 2R | 18424127..18424251 | 27..151 | 100 | -> | Plus |
| 2R | 18424326..18424486 | 152..312 | 100 | -> | Plus |
| 2R | 18424607..18424666 | 313..372 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:37:08 Download gff for
BS21730.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14312377..14312539 | 373..535 | 100 | -> | Plus |
| arm_2R | 14312845..14312946 | 536..637 | 100 | | Plus |
| arm_2R | 14311632..14311756 | 27..151 | 100 | -> | Plus |
| arm_2R | 14311831..14311991 | 152..312 | 100 | -> | Plus |
| arm_2R | 14312112..14312171 | 313..372 | 100 | -> | Plus |
BS21730.pep Sequence
Translation from 16 to 642
> BS21730.pep
MEDHNTANLSEPASPANSVASAEIAAEFAALSVEEKEQRRAEWSQELARV
EEEINTLRTVLASKTRHASDLKRKLGITVWKEVTDDVNQGLKNLKESTVY
QSVEQSVGTFTKTVYEAPLYQRTESVLKSTGEKTASVFGSITSGISSKLS
QMKNSESMRSIEASVGSAYENVKTKVTSRSGSVSSFPDALDENNTSSGLN
SPTDSLPK*
BS21730.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:59:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5174-PA | 208 | CG5174-PA | 1..208 | 1..208 | 1020 | 100 | Plus |
| CG5174-PL | 209 | CG5174-PL | 1..209 | 1..208 | 1002 | 99 | Plus |
| CG5174-PB | 355 | CG5174-PB | 152..355 | 5..208 | 996 | 100 | Plus |
| CG5174-PN | 222 | CG5174-PN | 1..222 | 1..208 | 995 | 93.7 | Plus |
| CG5174-PP | 365 | CG5174-PP | 148..365 | 5..208 | 971 | 93.6 | Plus |
