Clone BS21737 Report

Search the DGRC for BS21737

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:217
Well:37
Vector:pDNR-Dual
Associated Gene/TranscriptCG5780-RB
Protein status:BS21737.pep: gold
Sequenced Size:773

Clone Sequence Records

BS21737.complete Sequence

773 bp assembled on 2011-02-01

GenBank Submission: KX806473

> BS21737.complete
GAAGTTATCAGTCGACATGACCACTTGTTGCCTTGGAAACGCTGAGGATA
AACGTAAACAAAAGATGATGGACTGGGCCGAAGAACTCAAGATGACCATA
AGAAAGACGACGGCCAGGAAGGGTCGGCGCTCCAAGAGTCGCGATGTTCT
GAAGGAGGAGGATGTCCAGGCGGCTGGGGGCTCCAAGGACATTTCCATCG
ACATTACGCTGAATGTCCAGGCGGGCACCCCACCGACCACCTCGGACACG
GCCACCTCGTCCACATACAACAATGAATTCGAGTCACATCGACCACCCAT
TCGTCGCATTTCAGGTGGCTGGGCGGATTCTGGACTCAAAGGATTAAAGT
CTAAGAAAAACTCCTTTGATGATGAGCGCTTTAAACAAACAAAGTCGGCT
ACAAATTCCATACCAACGGATGACATTCCCGTCATCCCAGACATGGATGA
TGTCAAGGACGAAATCATGCTCAATGAGATTGTAGAACCGCCAACTATTG
GCACCTCACGATCTGCTGTTTTGAAGGAGGCCAATTCCGATTTGCTTTCC
CAGTACGCCTTTTCAGCTGTGGATGGCTTTGATCTCTCAATCCTCACCGA
TTGCCTGGTTCCACAGGAGAGCCTCAACGAGAAGGACGATCTCTGGCAGT
GGGACAAGCTGTTCACCGAGGTCACGGCTGAAATCCATTCGGATAAAGTG
CCCAATATGGGCATGAAAATAGGACCCGATGTGATTCCACCCACACAATA
TACTTAGAAGCTTTCTAGACCAT

BS21737.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:48:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG5780-RB 690 CG5780-PB 1..690 68..757 3435 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:48:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG5780-RB 881 CG5780-RB 25..766 16..757 3695 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:48:38
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12693987..12694248 757..496 1310 100 Minus
2L 23513712 2L 12694572..12694817 350..105 1230 100 Minus
2L 23513712 2L 12694304..12694426 495..373 615 100 Minus
2L 23513712 2L 12694874..12694964 106..16 455 100 Minus
Blast to na_te.dros performed on 2014-11-26 21:48:39 has no hits.

BS21737.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-01 15:39:32 Download gff for BS21737.complete
Subject Subject Range Query Range Percent Splice Strand
CG5780-RB 20..760 17..757 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:37:22 Download gff for BS21737.complete
Subject Subject Range Query Range Percent Splice Strand
CG5780-RB 26..766 17..757 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:42:51 Download gff for BS21737.complete
Subject Subject Range Query Range Percent Splice Strand
CG5780-RB 26..766 17..757 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:42:51 Download gff for BS21737.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12694494..12694517 349..372 95 <- Minus
2L 12693987..12694248 496..757 100 <- Minus
2L 12694304..12694426 373..495 100 <- Minus
2L 12694574..12694815 107..348 100 <- Minus
2L 12694874..12694963 17..106 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:37:22 Download gff for BS21737.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12694304..12694426 373..495 100 <- Minus
arm_2L 12694494..12694517 349..372 95 <- Minus
arm_2L 12693987..12694248 496..757 100 <- Minus
arm_2L 12694574..12694815 107..348 100 <- Minus
arm_2L 12694874..12694963 17..106 100   Minus

BS21737.pep Sequence

Translation from 16 to 756

> BS21737.pep
MTTCCLGNAEDKRKQKMMDWAEELKMTIRKTTARKGRRSKSRDVLKEEDV
QAAGGSKDISIDITLNVQAGTPPTTSDTATSSTYNNEFESHRPPIRRISG
GWADSGLKGLKSKKNSFDDERFKQTKSATNSIPTDDIPVIPDMDDVKDEI
MLNEIVEPPTIGTSRSAVLKEANSDLLSQYAFSAVDGFDLSILTDCLVPQ
ESLNEKDDLWQWDKLFTEVTAEIHSDKVPNMGMKIGPDVIPPTQYT*

BS21737.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:59:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG5780-PB 229 CG5780-PB 1..229 18..246 1186 100 Plus