BS21742.complete Sequence
1865 bp assembled on 2011-02-14
GenBank Submission: KX801300
> BS21742.complete
GAAGTTATCAGTCGACATGGAAACTAATGTGAATCCCCTGGCCGTAATCC
TGGTTTACTTCGATAGCAAGGGGGATCGGTTACTGTACAGGTATCCGTAC
CAGACTCTCGGCCAAACGGAGGTGGCCAACGACGAGCAGCGGAAGTCCAG
AAAGCGCAATCCCTATGCCGTGGCCAATACGGACGATCTGCTGCAGACAC
CCACCCACTTGGGTGCTGCCAAGAGCCAAGGACAACTGCAGGGATTCGCA
GATGAGGTCCTGTCCGCTCTGTTTGCTGTTAAACCACAGCTATGCAACCA
AAAGTTTGAACTCAAACTGAACGACGTACGCTTTGTCAGTCATCCCACTC
TGATACCGCAAAAGGAGCAGAGAAGTGGTCCAATGGCCAAGCAACAGATG
CTCATCAACATTGTTTTTGCGCTGCATGCACAGGCCAGCTACTCGATTGT
TAAGTGCTACCACGAACTGAGCAAGCGCCTTGGACTGGCGCTGAAGTTCG
AGGAGCAGCGCAGTGGCTATCTCACCGAGCAGACGGCTCAAATGGCTCGC
ACACACGACGAGCAGCAGCAACAGCCGCTGGAACGCACACTGGAGCTGAT
TGCAGAGCGCTGCAGCTTGGCACAGGCCTTGCGCTCCATCTTCCATGATC
TATGCACCACTGGACTGCTGAGTACCTCGCTGAATCACAACCTAACGTTG
TGCTTCTGTCTGCCCGCTAAGGCACACCAGCTCCATAAGAAGGGCAGCAT
GGTGGATCCAGAGACCATAGATCGGTGCCTTCGTGCACTGAAGCCCTATC
ATGGCATGTTGCTGCTGGTCGACTTTGCCGAATTGTTGGACTGCGTTCCA
CCGACTGGGGCACGCATGCTATGGCAGCTAGTCGACGTCTACGACCCACT
GATCAGTCTGCAGAGCATGTCCTCCAATGCAGACTTGAGTATCGAGCATG
TTTATAAGCTCGTCTCGCATTTGGTCTACTGGGCTAAGGCAACTATTATT
TATCCACTCTGCGAGACAAATGTCTATGTGATCGCGCCGGATGCACCATT
GCACACCAAGTCCCACCTGGTGGAGAAGTTCTCGGCCCGTTTTGCCGGTA
TGTCGCTGTTCGAGGTGATCTCCGATTTTTCATTGCCCACTTCAATTGGA
CACTTAACCACGCCACTGCAGCAGCCAGCGCGACAGGGTATCCTCGCACA
AATGGTGATTTGGATGCTGCAGCACCATTTGCTCATGCAGTTGCACACGT
ACGTTCAGTTTATGCCCAGCGAGGATGAATTCGGAGATTCGGCCTCCTGC
AGCAACCATCTAAGGGATGCCATTAGCGATGAAGAAGGAGACCAAGAACC
AGATGCGGACGAGTTGCATGGCTCCATGCTTAGCATGTCCAGTCATCCGT
TGCCAGTGCCAGCGGTATTGGTGGGCGGACATCGTCGTGAGGCGTCCGAG
GACCATTCATCACTGGCCTCGGACAACATCGCCGTGCAGCCATCATCCAG
CCACAAGTCCAATTTCAGCATCACCGCCTCGATGAGCACGGACAATTGCG
ACAGCCTCGATTCCATGGAGGATGAGCAGAAGCTGAAGGAGCTGCTACAG
GTTTTCAGCGATGCGGATCGAGCCGCCATCCGTCGAATTCCCGCCTCTGC
CAACGTGGATGATCTATCTCTGCTTGTGAAGCTGTATCAGATGGGTTACT
TTAAGAGCGAGCATCATCTGGAGGAGATCATGTACTTCGAGAACCTGCGA
CGTTCGCAACTGCTGCAATTGCTTGATAAATTCAGGGATGTGCTTATCAT
TTACGAAACCGAAGATCCTGCAATTGCATCCATGTACAATACCAAGTAGA
AGCTTTCTAGACCAT
BS21742.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:30:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8783-RC | 1833 | CG8783-PC | 1..1833 | 17..1849 | 9165 | 100 | Plus |
| CG8783-RA | 1833 | CG8783-PA | 1..1833 | 17..1849 | 9165 | 100 | Plus |
| CG8783-RB | 1833 | CG8783-PB | 1..1833 | 17..1849 | 9165 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:30:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8783-RC | 2226 | CG8783-RC | 38..1872 | 16..1850 | 9175 | 100 | Plus |
| CG8783-RA | 2380 | CG8783-RA | 192..2026 | 16..1850 | 9175 | 100 | Plus |
| CG8783-RB | 2297 | CG8783-RB | 109..1943 | 16..1850 | 9175 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:30:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13999734..14001436 | 1850..148 | 8515 | 100 | Minus |
| 3L | 28110227 | 3L | 14001493..14001627 | 150..16 | 675 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:30:08 has no hits.
BS21742.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-09 09:17:47 Download gff for
BS21742.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8783-RA | 193..2025 | 17..1849 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:55:30 Download gff for
BS21742.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8783-RB | 110..1942 | 17..1849 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:26:48 Download gff for
BS21742.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8783-RB | 110..1942 | 17..1849 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:26:48 Download gff for
BS21742.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13999735..14001433 | 151..1849 | 100 | <- | Minus |
| 3L | 14001493..14001626 | 17..150 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:55:30 Download gff for
BS21742.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13992835..13994533 | 151..1849 | 100 | <- | Minus |
| arm_3L | 13994593..13994726 | 17..150 | 100 | | Minus |
BS21742.pep Sequence
Translation from 16 to 1848
> BS21742.pep
METNVNPLAVILVYFDSKGDRLLYRYPYQTLGQTEVANDEQRKSRKRNPY
AVANTDDLLQTPTHLGAAKSQGQLQGFADEVLSALFAVKPQLCNQKFELK
LNDVRFVSHPTLIPQKEQRSGPMAKQQMLINIVFALHAQASYSIVKCYHE
LSKRLGLALKFEEQRSGYLTEQTAQMARTHDEQQQQPLERTLELIAERCS
LAQALRSIFHDLCTTGLLSTSLNHNLTLCFCLPAKAHQLHKKGSMVDPET
IDRCLRALKPYHGMLLLVDFAELLDCVPPTGARMLWQLVDVYDPLISLQS
MSSNADLSIEHVYKLVSHLVYWAKATIIYPLCETNVYVIAPDAPLHTKSH
LVEKFSARFAGMSLFEVISDFSLPTSIGHLTTPLQQPARQGILAQMVIWM
LQHHLLMQLHTYVQFMPSEDEFGDSASCSNHLRDAISDEEGDQEPDADEL
HGSMLSMSSHPLPVPAVLVGGHRREASEDHSSLASDNIAVQPSSSHKSNF
SITASMSTDNCDSLDSMEDEQKLKELLQVFSDADRAAIRRIPASANVDDL
SLLVKLYQMGYFKSEHHLEEIMYFENLRRSQLLQLLDKFRDVLIIYETED
PAIASMYNTK*
BS21742.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:09:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8783-PC | 610 | CG8783-PC | 1..610 | 1..610 | 3143 | 100 | Plus |
| CG8783-PA | 610 | CG8783-PA | 1..610 | 1..610 | 3143 | 100 | Plus |
| CG8783-PB | 610 | CG8783-PB | 1..610 | 1..610 | 3143 | 100 | Plus |
