BS21753.complete Sequence
1799 bp assembled on 2011-02-14
GenBank Submission: KX802304
> BS21753.complete
GAAGTTATCAGTCGACATGTCGGAAAAAGATCTGGATGCGATTATTTTGG
AGACCCAAAAGGTTTTGGGCAAGTACATCAAAAAGCCACCGCTCACGGAG
AAGCTGCTGAAGAAGCCGCCATTCCGATTTCTAATGGATGTCTTTAGTAA
CTTTATCAAGCAAAGTGGCACATTTGATGGATTATACACGCCGGAAGAGC
AGATGTTCGAGAACATAACCAGTCGGGAGGATAAGATTCGATTTCTGCAG
AAGATGATCGATGCAACCAAACTAACAACCAAACTGGATCTCAAAGTACG
CACTTCAAAAATAGTTGCTGGCCAGGAACCGGAGCTCACCAATGAGCTCC
TCCAGGCGATGGCCAGTGTTGCGGAAAAGAACTTGGAGTGGGACAGCATT
GTGGATCAGGTGGTGATTTCCCACAGCAAAACACCACTGACGCTTACCAA
GCCACCGAAGGAAACTAAAAATTCAAGCAAAAATCCCTCACCCGCCGGCA
AGGATGAGGATGCAAAGCGACGCAAGGAGAAACGTATATCGCCTCAAGAG
CAGAAGCTGCGCAAGGTCAAAGAACAGGTGTCCCGTTCTACTCCCCCCAC
CGAGAAGGATAAAGCATCCCAGAAGAAGTCCAAGGCACCCAAGGATGAGA
CGAAGTTAAGTCGACAAAACTCGAAGCAAAAGAGTCCGTCACCAGTTAAG
CAGAAGTCCAAAGCCAAACTGCAGCCTTCAACAGAGAGCGATAATCTTAG
CCAGTCTATGTCGCCAGTGGAAGAAGGATCAACCAAGCCTGCTGCAAGCG
AAAGTGCTCCAAGCAAACCAGAGCCGGAAATGGTTCCTCCATTAAAAGAG
AAGGAGGCAGTGGTGAGACCTGTCCAGGAAACTCCAACTGCTCCACCAGC
TGAGCCTGAGAGTCGCAAATCCTCTAGCAGAAGTCGCCGTTCTAGTGGCA
GCCACAGGCAACCGGAACCTAATCCCATTCCCAATGAGAGCCAATCCCAG
CCAGCGGTGCAGTCGTCAGAAACCAGCTCTCCACCGGAGACCAACAGCGG
CGAAGCGAAGCGGGAGGTTCCCCTCACCAGAGAGAACTCTAAGGAAGTGA
ATCAACGGCCCAGAACCTCACTTAGACCTCCATCCGCTCGACCCGCCTCC
GCACGTCCCGGAGCTCCACGACGTCGCAATGTGGAGATCGTGCTCCAGCC
AAACGATCAGATCAAAATGTCGGGCATAAATGTAAAGCTTGAAACCTTTG
GCGACTTGGACGACGACGGAGAGAACCTGGTGATCATAGAAGATTCCGCC
GCCCATGATATTGTCGAAGGTGGCGGTGACGAACCGGCATTGGAAGGACA
GCTCGATGCCCAGGGACGATTGGTGCAGCAGATCTTGGAAACGCAAAAGG
AACTGGTCAATCAAGGCGCCGAAGTGGAACCGCCTCCAGCACAGGCAGGC
CGACAAACTTCTGCGCGCCAGGTGAACGACGTACGCGACGTAGTCCAAAA
GCTCACCAAGTCGATAGGTCCGCTGGGTAAACTACTGGACTGCATACCCG
AGGATTTTGATGCAATGCAGCTGGAGCTTACGATGTGGCGCGACACCTAC
ACGCAGGCATCCACGGAACTAAAAAGGGAGCAGACTCTCACGGCATCTGC
CACGGAGCCCCTGCAGCATCAGTTGCAGCAAATCCAAGCCAGCATTGCGG
AGTACCGGGAGCTAATCGACGAGAGTCGCCACAAGATCTTGCAAAACAAC
GCACGTATTCTGAAGTTGATGATGGAACAGTAAAAGCTTTCTAGACCAT
BS21753.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:31:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3259-RA | 1767 | CG3259-PA | 1..1767 | 17..1783 | 8835 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:31:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3259-RA | 1843 | CG3259-RA | 29..1795 | 17..1783 | 8835 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:31:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14303459..14304410 | 832..1783 | 4760 | 100 | Plus |
| 3R | 32079331 | 3R | 14302832..14303396 | 270..834 | 2825 | 100 | Plus |
| 3R | 32079331 | 3R | 14302456..14302590 | 17..151 | 675 | 100 | Plus |
| 3R | 32079331 | 3R | 14302655..14302772 | 152..269 | 590 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:31:01 has no hits.
BS21753.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-09 09:17:50 Download gff for
BS21753.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3259-RA | 1..1765 | 17..1781 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:55:50 Download gff for
BS21753.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3259-RA | 29..1793 | 17..1781 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:27:03 Download gff for
BS21753.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3259-RA | 29..1793 | 17..1781 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:27:03 Download gff for
BS21753.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14302456..14302590 | 17..151 | 100 | -> | Plus |
| 3R | 14302655..14302772 | 152..269 | 100 | -> | Plus |
| 3R | 14302832..14303394 | 270..832 | 100 | -> | Plus |
| 3R | 14303460..14304408 | 833..1781 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:55:50 Download gff for
BS21753.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10128178..10128312 | 17..151 | 100 | -> | Plus |
| arm_3R | 10128377..10128494 | 152..269 | 100 | -> | Plus |
| arm_3R | 10128554..10129116 | 270..832 | 100 | -> | Plus |
| arm_3R | 10129182..10130130 | 833..1781 | 100 | | Plus |
BS21753.pep Sequence
Translation from 16 to 1782
> BS21753.pep
MSEKDLDAIILETQKVLGKYIKKPPLTEKLLKKPPFRFLMDVFSNFIKQS
GTFDGLYTPEEQMFENITSREDKIRFLQKMIDATKLTTKLDLKVRTSKIV
AGQEPELTNELLQAMASVAEKNLEWDSIVDQVVISHSKTPLTLTKPPKET
KNSSKNPSPAGKDEDAKRRKEKRISPQEQKLRKVKEQVSRSTPPTEKDKA
SQKKSKAPKDETKLSRQNSKQKSPSPVKQKSKAKLQPSTESDNLSQSMSP
VEEGSTKPAASESAPSKPEPEMVPPLKEKEAVVRPVQETPTAPPAEPESR
KSSSRSRRSSGSHRQPEPNPIPNESQSQPAVQSSETSSPPETNSGEAKRE
VPLTRENSKEVNQRPRTSLRPPSARPASARPGAPRRRNVEIVLQPNDQIK
MSGINVKLETFGDLDDDGENLVIIEDSAAHDIVEGGGDEPALEGQLDAQG
RLVQQILETQKELVNQGAEVEPPPAQAGRQTSARQVNDVRDVVQKLTKSI
GPLGKLLDCIPEDFDAMQLELTMWRDTYTQASTELKREQTLTASATEPLQ
HQLQQIQASIAEYRELIDESRHKILQNNARILKLMMEQ*
BS21753.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:10:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3259-PA | 588 | CG3259-PA | 1..588 | 1..588 | 2963 | 100 | Plus |
| PPP4R2r-PD | 522 | CG2890-PD | 232..430 | 164..347 | 168 | 29.8 | Plus |
| PPP4R2r-PC | 609 | CG2890-PC | 319..517 | 164..347 | 168 | 29.8 | Plus |
| PPP4R2r-PB | 609 | CG2890-PB | 319..517 | 164..347 | 168 | 29.8 | Plus |
| PPP4R2r-PA | 609 | CG2890-PA | 319..517 | 164..347 | 168 | 29.8 | Plus |
