BS21774.complete Sequence
2153 bp assembled on 2011-02-14
GenBank Submission: KX804788
> BS21774.complete
GAAGTTATCAGTCGACATGAACTTCCAGATGGCCGAAACGATCAGTACAG
CGGCCAGCGGCATGGAGTTGGCCCTAAAAGACCCCAGTCCAACGGTGGGT
GGCGGCATCATTGTGGACATGACGCCCACCACGGCGGCGCTGCTGCATCA
CAACGCTATGGCGCTGCGCAGCCTCAAGGATGCCGCCTCATCCGCCTCCG
AATCAGAGCTACAGGAACCGCGATCACCGACACCCACGCCCACGAATCTC
AGCACCGGCCCCCACTCGCCGCCAATGACCTTCCGCTGCGAGCGTTGCGA
CAGTTTCGAGACCAGCTCGCGGGCATCCCTGCTGCTCCATGTCGTCCAGT
GTCTGGCTGGTCAGGCGGCGGCGGCGGCAGCAGCGGCGGCGGCATCGGCC
CGCCTGAAGAGTGAGGATCTGCAGGAGCCGGAGAACATGAGCTTGGGTCA
CATGGAGGGCGGCAAGGGCGATGGCCAGACGGGCAATGGTTCCAGCTCCT
CGGCTAGCTCCTCTCCGGCCGGGAATAGCGGAGGAGGAGGCGGTGGCAAC
AGCAGTTCGCGCAAGGTCTTCGAGTGCGATGTGTGCAACATGAAGTTCTC
CAACGGCGCCAACATGCGCCGCCACAAGATGCGACACACTGGTGTCAAGC
CCTACGAGTGCCGGGTGTGCCAGAAGAGATTCTTCCGCAAGGATCACCTG
GCGGAGCACTTCACGACGCACACCAAGACGCTGCCCTATCACTGTCCGAT
CTGCAATCGTGGCTTCCAGCGCCAGATAGCTATGCGCGCCCACTTCCAGA
ACGAACATGTTGGCCAGCATGATCTGGTGAAGACGTGTCCGCTTTGCAGC
TACCGAGCGGGGTCCATGAAGTCGCTGAGGATTCATTTCTTCAACCGTCA
CGGCATCGATCTGGATAACCCGGGACCGGGTGGCACCTCTTCGTTGCTCC
TGGCCCTGGAATCACAGGCTTCGGCGGCGGCAGCAGCGGCGGCAGCTAGT
TACGTGCCACCTGGACTTAGTCCGGTGCCCGTGCAATCTCAGTCCCAGCA
GCAGCAGCAGCAACAGGTGGCTCCTCCGGCTAGCGATAGCGGCGAGTCCA
TGCGATCCCTGGAGAATGCCACGCCCCCCATGCACTTCCTCACGCCCCAC
GTGGAGATCTCGACGCTGGGCGAGAGTGGCAACACGGAGTTGTTTAATGG
CAACAACAACAACAATAATAACAACAACTGCGCTACCAACAACAATAACA
ATATAAATGGAGCGAGCAACAACTGCAACTCCATTAGCAATGGAAATGCC
GAGTCCAATGGCGATAAGGTGAAAGATCGAGCCCTCATCATGCAATCCCC
GGTGGAGTTGCCAATGGATTGCAACACAAAGGCCACGCCCATCACATCCA
GCACCACAGCCAGCAGTCTGAGTGGCGGCCTGAAGAGCCATCACCAGCAT
CCGCATCACCATCACCACCACCATCACCACCACGAGAACCACATAACGCC
GTCGATCAGTCTTATACCTATCAAACAGGAGCCCATGTCGGAGGATATGG
ACAAGAAGGACCTGATGAACGGTAGTGATCCAAGCAGCGATACAGAACAG
GCTTCCAACAATAACAACAGCAGCAGCAACAACAACAGAATCACCTCACT
GATCAAGGTCTCGCCACTGAAATCGCTCCTACGCGAGGATCTCAAGCGTC
GCATCTGCGCAAAGGCCAACAACCGGATCACCCGGAATGCCACGCCGCTG
GAGAGTAACAACAACAATTCCGTGCTGTCCAACAGCCTGAGCAACGGATC
CGGTCGCGGATCACCCGGAGTGAATGGCGGCAGCGGAGGAGGTGGAGGCG
GCGGACCACCCACACCGGCGACACCCAGTGCCACCAATGGTGCTAGCTCG
ACGCCCATCTGCAACGGGACCATCACGTCGACTGGCCAGGATGGAGACCT
GCTGATCAACCGCAAGCTGATTCTCACCTGCCACTTCTGCGGCATCGAGT
TCCCGGACGAGACGCTATACTTCCTGCACAAGGGCTGCCACTGCGAGAGC
AATCCGTGGCGTTGCAACATATGCGGCGAGCAGCTAAACAACGTCTACGA
GTTCAACTCGCACCTGCTCAGCAAGAGCCACCAATAGAAGCTTTCTAGAC
CAT
BS21774.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:31:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12769-RA | 2121 | CG12769-PA | 1..2121 | 17..2137 | 10605 | 100 | Plus |
| CG12769-RB | 2109 | CG12769-PB | 1..2109 | 29..2137 | 10545 | 100 | Plus |
| CG12769-RC | 2142 | CG12769-PC | 1..1170 | 29..1198 | 5850 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:31:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12769-RA | 3863 | CG12769-RA | 1209..3333 | 17..2141 | 10610 | 100 | Plus |
| CG12769-RB | 4707 | CG12769-RB | 314..2428 | 27..2141 | 10560 | 100 | Plus |
| CG12769-RC | 4740 | CG12769-RC | 314..1485 | 27..1198 | 5860 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:31:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8056161..8057343 | 1199..17 | 5915 | 100 | Minus |
| 2R | 25286936 | 2R | 8054359..8054844 | 2141..1656 | 2415 | 99.8 | Minus |
| 2R | 25286936 | 2R | 8055731..8056061 | 1529..1199 | 1655 | 100 | Minus |
| 2R | 25286936 | 2R | 8054903..8055035 | 1659..1527 | 665 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 01:31:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2378..2833 | 1200..1646 | 194 | 54.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2417..2987 | 1200..1767 | 192 | 54.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2466..2803 | 1439..1796 | 185 | 55.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2322..2650 | 1439..1766 | 162 | 54.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6719..7055 | 1603..1921 | 155 | 54.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1124..1170 | 1606..1652 | 145 | 78.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6782 | 1578..1645 | 143 | 72.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2397..2428 | 1606..1637 | 142 | 93.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2316..2504 | 1606..1797 | 141 | 56.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2400..2436 | 1606..1642 | 140 | 86.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2337..2376 | 1606..1645 | 137 | 82.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2340..2379 | 1606..1645 | 137 | 82.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6764..6803 | 1606..1645 | 137 | 82.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6785..6824 | 1606..1645 | 137 | 82.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6818..6857 | 1606..1645 | 137 | 82.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2429..2476 | 1592..1637 | 136 | 79.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6810..6872 | 1583..1645 | 134 | 73.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6680..6908 | 1407..1645 | 134 | 57.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6923 | 1429..1636 | 134 | 55.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2370..2409 | 1606..1645 | 128 | 80 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1545..1584 | 1606..1645 | 128 | 80 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3590..3647 | 1599..1656 | 128 | 69 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2359..2421 | 1583..1645 | 125 | 70.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2334..2373 | 1606..1645 | 119 | 77.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6797..6836 | 1606..1645 | 119 | 77.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6813..6886 | 1583..1656 | 118 | 62.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6834..6899 | 1583..1645 | 115 | 68.2 | Plus |
BS21774.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-09 09:17:52 Download gff for
BS21774.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12769-RA | 1209..3329 | 17..2137 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:56:05 Download gff for
BS21774.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12769-RA | 1209..3329 | 17..2137 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:27:15 Download gff for
BS21774.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12769-RA | 1209..3329 | 17..2137 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:27:15 Download gff for
BS21774.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8054363..8054842 | 1658..2137 | 100 | <- | Minus |
| 2R | 8054905..8055033 | 1529..1657 | 100 | <- | Minus |
| 2R | 8055732..8056061 | 1199..1528 | 100 | <- | Minus |
| 2R | 8056162..8057343 | 17..1198 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:56:05 Download gff for
BS21774.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3941868..3942347 | 1658..2137 | 100 | <- | Minus |
| arm_2R | 3942410..3942538 | 1529..1657 | 100 | <- | Minus |
| arm_2R | 3943237..3943566 | 1199..1528 | 100 | <- | Minus |
| arm_2R | 3943667..3944848 | 17..1198 | 100 | | Minus |
BS21774.pep Sequence
Translation from 16 to 2136
> BS21774.pep
MNFQMAETISTAASGMELALKDPSPTVGGGIIVDMTPTTAALLHHNAMAL
RSLKDAASSASESELQEPRSPTPTPTNLSTGPHSPPMTFRCERCDSFETS
SRASLLLHVVQCLAGQAAAAAAAAAASARLKSEDLQEPENMSLGHMEGGK
GDGQTGNGSSSSASSSPAGNSGGGGGGNSSSRKVFECDVCNMKFSNGANM
RRHKMRHTGVKPYECRVCQKRFFRKDHLAEHFTTHTKTLPYHCPICNRGF
QRQIAMRAHFQNEHVGQHDLVKTCPLCSYRAGSMKSLRIHFFNRHGIDLD
NPGPGGTSSLLLALESQASAAAAAAAASYVPPGLSPVPVQSQSQQQQQQQ
VAPPASDSGESMRSLENATPPMHFLTPHVEISTLGESGNTELFNGNNNNN
NNNNCATNNNNNINGASNNCNSISNGNAESNGDKVKDRALIMQSPVELPM
DCNTKATPITSSTTASSLSGGLKSHHQHPHHHHHHHHHHENHITPSISLI
PIKQEPMSEDMDKKDLMNGSDPSSDTEQASNNNNSSSNNNRITSLIKVSP
LKSLLREDLKRRICAKANNRITRNATPLESNNNNSVLSNSLSNGSGRGSP
GVNGGSGGGGGGGPPTPATPSATNGASSTPICNGTITSTGQDGDLLINRK
LILTCHFCGIEFPDETLYFLHKGCHCESNPWRCNICGEQLNNVYEFNSHL
LSKSHQ*
BS21774.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:10:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12769-PA | 706 | CG12769-PA | 1..706 | 1..706 | 3761 | 100 | Plus |
| CG12769-PB | 702 | CG12769-PB | 1..702 | 5..706 | 3739 | 100 | Plus |
| CG12769-PC | 713 | CG12769-PC | 1..713 | 5..706 | 3717 | 98.5 | Plus |
| Kr-PB | 502 | CG3340-PB | 181..330 | 145..296 | 235 | 33.3 | Plus |
| Kr-PA | 502 | CG3340-PA | 181..330 | 145..296 | 235 | 33.3 | Plus |
