BS21777.complete Sequence
1607 bp assembled on 2011-02-14
GenBank Submission: KX800176
> BS21777.complete
GAAGTTATCAGTCGACATGGCAACGCAAAAGGAAGATCACACCGCCCTGG
ATCTCATAATCAAGTCACTCAAGTCGCCTACAATGGTCTGCGAGGGAACC
CACTTTGACGGCAAGATTCCGCACACGTTCGTCATCTTTGGGGCGTCGGG
CGATCTGGCCAAGAAGAAGATCTACCCCACGCTCTGGTGGCTCTACCGCG
ATGACCTGCTGCCCAAGCCGACCAAGTTCTGCGGCTATGCCCGTTCCATG
CTGACCGTCGATAGCATCAAGGAGCAGTGTCTGCCGTACATGAAGGTCCA
GCCGCACGAGCAGAAGAAGTACGAGGAGTTCTGGGCCCTCAATGAGTACG
TGTCCGGCAGATATGACGGACGCACTGGCTTCGAGCTGCTTAACCAGCAG
CTGGAGATTATGGAGAACAAGAACAAGGCCAACCGCATCTTCTATCTGGC
CCTGCCGCCCAGCGTCTTCGAGGAGGTGACTGTCAACATCAAGCAGATCT
GCATGTCGGTCTGCGGTTGGAACCGCGTGATCATCGAGAAGCCTTTCGGC
CGGGATGACGCCTCCTCGCAGGCGCTGAGCGACCATCTGGCCGGTCTGTT
CCAGGAGGATCAGCTGTACCGCATCGATCACTACCTGGGCAAGGAGATGG
TGCAGAACCTGATGACCATACGCTTCGGCAACAAGATCCTCAGCTCGACG
TGGAACCGCGAGAACATCGCCTCCGTGCTGATCACGTTCAAGGAGCCCTT
CGGCACGCAGGGTCGTGGCGGCTACTTCGACGAGTTCGGCATCATACGCG
ACGTGATGCAGAACCATCTGCTGCAGATCCTCTCGCTGGTGGCCATGGAG
AAGCCGGTGAGCTGCCACCCGGACGACATTCGTGACGAGAAGGTCAAGGT
GCTGAAGAGCATCGAGGCCCTGACGCTGGATGACATGGTGCTGGGCCAGT
ACCTGGGCAATCCGCAGGGTACAAACGATGATGCGCGCACGGGCTACGTG
GAGGACCCCACCGTTAGCAACGATTCGAACACGCCCACCTACGCCCTCGG
CGTGCTCAAGATCAACAACGAGCGCTGGCAGGGAGTGCCCTTCATCCTGC
GCTGCGGCAAGGCGCTGAACGAGCGCAAGGCGGAGGTGCGCATCCAGTAC
CAGGACGTGCCCGGCGACATCTTCGAGGGCAATACGAAGCGCAACGAGCT
GGTCATACGCGTCCAGCCGGGCGAGGCCCTGTACTTTAAGATGATGACCA
AGAGCCCCGGCATCACGTTCGACATCGAGGAGACGGAGCTGGACCTCACC
TACGAGCACCGCTACAAGGACTCCTACCTGCCGGACGCGTACGAGCGTCT
CATCCTCGACGTCTTCTGCGGCTCCCAGATGCACTTCGTCCGCTCGGACG
AGCTGCGCGAGGCGTGGCGCATCTTCACGCCCATTCTGCACCAGATCGAG
AAGGAGCACATTCGTCCAATCACCTACCAGTACGGATCGCGCGGTCCCAA
GGAGGCGGACCGCAAGTGCGAGGAGAACAATTTCAAGTACTCCGGCTCCT
ACAAGTGGCACGGCGGCAAGGCGGCCACGTCCAATCACTGAAAGCTTTCT
AGACCAT
BS21777.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:32:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Zw-RA | 1575 | CG12529-PA | 1..1575 | 17..1591 | 7785 | 99.6 | Plus |
| Zw-RC | 1509 | CG12529-PC | 1..1509 | 83..1591 | 7455 | 99.6 | Plus |
| Zw-RB | 1509 | CG12529-PB | 1..1509 | 83..1591 | 7455 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:32:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Zw-RA | 2092 | CG12529-RA | 351..1925 | 17..1591 | 7785 | 99.6 | Plus |
| Zw-RB | 2069 | CG12529-RB | 346..1902 | 35..1591 | 7695 | 99.6 | Plus |
| Zw-RC | 1797 | CG12529-RC | 75..1630 | 36..1591 | 7690 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:32:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19671108..19672186 | 513..1591 | 5305 | 99.4 | Plus |
| X | 23542271 | X | 19670482..19670745 | 34..297 | 1320 | 100 | Plus |
| X | 23542271 | X | 19670804..19671023 | 294..513 | 1100 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:32:22 has no hits.
BS21777.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-14 17:42:36 Download gff for
BS21777.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zw-RA | 370..1943 | 17..1590 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:56:20 Download gff for
BS21777.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zw-RA | 303..1876 | 17..1590 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:27:26 Download gff for
BS21777.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zw-RA | 351..1924 | 17..1590 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:27:26 Download gff for
BS21777.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19667602..19667620 | 17..35 | 100 | -> | Plus |
| X | 19670484..19670743 | 36..295 | 100 | -> | Plus |
| X | 19670806..19671023 | 296..513 | 100 | -> | Plus |
| X | 19671109..19672185 | 514..1590 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:56:20 Download gff for
BS21777.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19561635..19561653 | 17..35 | 100 | -> | Plus |
| arm_X | 19564517..19564776 | 36..295 | 100 | -> | Plus |
| arm_X | 19564839..19565056 | 296..513 | 100 | -> | Plus |
| arm_X | 19565142..19566218 | 514..1590 | 99 | | Plus |
BS21777.pep Sequence
Translation from 16 to 1590
> BS21777.pep
MATQKEDHTALDLIIKSLKSPTMVCEGTHFDGKIPHTFVIFGASGDLAKK
KIYPTLWWLYRDDLLPKPTKFCGYARSMLTVDSIKEQCLPYMKVQPHEQK
KYEEFWALNEYVSGRYDGRTGFELLNQQLEIMENKNKANRIFYLALPPSV
FEEVTVNIKQICMSVCGWNRVIIEKPFGRDDASSQALSDHLAGLFQEDQL
YRIDHYLGKEMVQNLMTIRFGNKILSSTWNRENIASVLITFKEPFGTQGR
GGYFDEFGIIRDVMQNHLLQILSLVAMEKPVSCHPDDIRDEKVKVLKSIE
ALTLDDMVLGQYLGNPQGTNDDARTGYVEDPTVSNDSNTPTYALGVLKIN
NERWQGVPFILRCGKALNERKAEVRIQYQDVPGDIFEGNTKRNELVIRVQ
PGEALYFKMMTKSPGITFDIEETELDLTYEHRYKDSYLPDAYERLILDVF
CGSQMHFVRSDELREAWRIFTPILHQIEKEHIRPITYQYGSRGPKEADRK
CEENNFKYSGSYKWHGGKAATSNH*
BS21777.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:10:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Zw-PA | 524 | CG12529-PA | 1..524 | 1..524 | 2797 | 100 | Plus |
| Zw-PC | 502 | CG12529-PC | 1..502 | 23..524 | 2689 | 100 | Plus |
| Zw-PB | 502 | CG12529-PB | 1..502 | 23..524 | 2689 | 100 | Plus |
| CG7140-PB | 533 | CG7140-PB | 12..495 | 36..515 | 1038 | 43.5 | Plus |
