BS21778.complete Sequence
1229 bp assembled on 2011-02-14
GenBank Submission: KX802171
> BS21778.complete
GAAGTTATCAGTCGACATGGACGAAGATTATTCGGCGTCATCTTCGGCCG
GCGGTGGCAAGAAGGCCGGCAAGCAGCACAACACGCTGCCCTTTTGGGGC
AACGAATCCTCGATGAACTTGAATGCCCTGATCCTGGCCAACATCCAGAG
CTCCAGCTACTTCAAAGTCCATTTGTTTAAACTGAAAACGTACCATGAAG
TGGTCGACGAGATCTACTACCAGGTGAAGCATATGGAGCCCTGGGAGCGT
GGATCCCGCAAAACGTCCGGACAAACGGGCATGTGCGGCGGTGTGCGAGG
CGTTGGCGCCGGCGGCATTGTGTCAACGGCATATTGCCTGCTCTACAAGC
TATACACGCTGCGGCTGACCCGGAAGCAGATCAACGGACTGCTCAATCAT
ACAGACTCGGCCTACATCCGGGCACTAGGCTTTATGTACTTGCGATACAC
GCAGCCGCCGGGTGACCTTTACGACTGGTATGAGGACTATTTGCAGGACG
AGGAGGAGATCGACGTGAAAGCGGGCGGCGGCCAGGTCTTAACCATCGGA
CAGATGGTTTATCAGTTTATGACCAAGCTGGACTGGTTCTCCACGCTCTT
TCCGCGCATCCCCGTGCCGATTCAAAAGCAGATCGAGAAGAGGATCGAGC
AATACTGTAGGGAGCAGGGGGTGACCGTCCATCAGTTGAGCACGGGTCGG
TCAACGGCGGGCACTGGTGGTGGTCCTGGAGCCGCTGGCCAGGATGCGGA
CTACCAGGACTATCCGGAGGGAGGAGTAGAGCGTGGAAGCGGCGGACGTG
GCGGTGGACAAGCTGGCTCCCGTTCCAACGCCTACCCACAACCGAATAAC
TACCGCAACGATTATGACGAGCGTGACTACTATGCTGCCGCGTCTGGCTC
GTCCTACGGCCGTGGTCGCGGTGGCTATGAGGACTACCCACCGGCGCCGC
TGCCACCACAGATGCCTTACGGCGAGCGCGAAAGGGAGAGGGATCGCGAT
CGGGATAAGAATAAGGATTACGACCGCCACCGCAGCAAGCACAAGAAGAA
GCACAACCATAGACAAAGCTCGCGTAGCCGCAGCAGAAGCCGCAGCCGGA
GTCGCCACCGCTCCGAGCGCCATGAGCGCAAGCGGGACGGTGGTGGCTAC
GAGCGGAGCAGCAAGAGCCGGCACAACGAACACTATGAAGAGCGTGAGCG
ACGTCATCGGTGAAAGCTTTCTAGACCAT
BS21778.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:33:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1622-RA | 1197 | CG1622-PA | 1..1197 | 17..1213 | 5970 | 99.9 | Plus |
| CG1622-RB | 537 | CG1622-PB | 1..521 | 17..537 | 2590 | 99.8 | Plus |
| CG1622-RC | 426 | CG1622-PC | 1..413 | 17..429 | 2050 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:33:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1622-RA | 1682 | CG1622-RA | 141..1346 | 9..1214 | 5985 | 99.8 | Plus |
| CG1622-RB | 1693 | CG1622-RB | 141..1357 | 9..1214 | 5840 | 98.8 | Plus |
| CG1622-RC | 1987 | CG1622-RC | 864..1651 | 427..1214 | 3940 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:32:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13298893..13299574 | 533..1214 | 3410 | 100 | Plus |
| X | 23542271 | X | 13297305..13297447 | 25..167 | 700 | 99.3 | Plus |
| X | 23542271 | X | 13297747..13297883 | 293..429 | 685 | 100 | Plus |
| X | 23542271 | X | 13297525..13297654 | 166..295 | 650 | 100 | Plus |
| X | 23542271 | X | 13298694..13298814 | 417..537 | 560 | 97.5 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:33:00 has no hits.
BS21778.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-14 17:48:18 Download gff for
BS21778.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1622-RA | 132..1327 | 17..1212 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:56:37 Download gff for
BS21778.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1622-RA | 149..1344 | 17..1212 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:27:36 Download gff for
BS21778.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1622-RA | 149..1344 | 17..1212 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:27:36 Download gff for
BS21778.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13297305..13297447 | 25..167 | 99 | -> | Plus |
| X | 13297527..13297651 | 168..292 | 100 | -> | Plus |
| X | 13297747..13297882 | 293..428 | 100 | -> | Plus |
| X | 13298706..13298812 | 429..535 | 100 | -> | Plus |
| X | 13298896..13299572 | 536..1212 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:56:37 Download gff for
BS21778.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13191338..13191480 | 25..167 | 99 | -> | Plus |
| arm_X | 13191560..13191684 | 168..292 | 100 | -> | Plus |
| arm_X | 13191780..13191915 | 293..428 | 100 | -> | Plus |
| arm_X | 13192739..13192845 | 429..535 | 100 | -> | Plus |
| arm_X | 13192929..13193605 | 536..1212 | 100 | | Plus |
BS21778.pep Sequence
Translation from 16 to 1212
> BS21778.pep
MDEDYSASSSAGGGKKAGKQHNTLPFWGNESSMNLNALILANIQSSSYFK
VHLFKLKTYHEVVDEIYYQVKHMEPWERGSRKTSGQTGMCGGVRGVGAGG
IVSTAYCLLYKLYTLRLTRKQINGLLNHTDSAYIRALGFMYLRYTQPPGD
LYDWYEDYLQDEEEIDVKAGGGQVLTIGQMVYQFMTKLDWFSTLFPRIPV
PIQKQIEKRIEQYCREQGVTVHQLSTGRSTAGTGGGPGAAGQDADYQDYP
EGGVERGSGGRGGGQAGSRSNAYPQPNNYRNDYDERDYYAAASGSSYGRG
RGGYEDYPPAPLPPQMPYGERERERDRDRDKNKDYDRHRSKHKKKHNHRQ
SSRSRSRSRSRSRHRSERHERKRDGGGYERSSKSRHNEHYEERERRHR*
BS21778.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:10:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1622-PA | 398 | CG1622-PA | 1..398 | 1..398 | 2154 | 100 | Plus |
| CG1622-PB | 178 | CG1622-PB | 1..174 | 1..174 | 931 | 100 | Plus |
| CG1622-PC | 141 | CG1622-PC | 1..138 | 1..138 | 728 | 100 | Plus |
