BS21779.complete Sequence
1754 bp assembled on 2011-02-14
GenBank Submission: KX803777
> BS21779.complete
GAAGTTATCAGTCGACATGTTCCGTTTGCCAGTTTCGCTTGCTCGCTCCT
CCATTAGCCGCCAGTTGGCCATGCGCGGCTATGCCAAGGATGTGCGTTTC
GGACCCGAGGTGCGCGCCATGATGCTCCAGGGCGTCGATGTGCTGGCCGA
TGCTGTGGCAGTGACCATGGGCCCCAAGGGTCGCAATGTGATCATTGAGC
AGTCGTGGGGCTCGCCCAAAATCACCAAGGACGGCGTCACTGTGGCCAAG
TCCATTGAGCTGAAGGACAAGTTCCAGAACATCGGTGCCAAGCTGGTCCA
GGATGTGGCCAACAATACCAACGAGGAGGCCGGTGATGGCACCACCACGG
CCACCGTTCTGGCTCGCGCCATTGCCAAGGAGGGCTTCGAGAAGATCTCC
AAGGGCGCCAATCCCGTCGAGATTCGTCGCGGTGTCATGCTGGCCGTTGA
GACCGTCAAGGACAACCTGAAGACCATGTCGCGCCCCGTTAGCACGCCCG
AGGAGATCGCCCAGGTGGCCACCATCTCGGCCAACGGTGATCAGGCCATC
GGCAATCTCATCAGCGAGGCCATGAAGAAGGTGGGACGCGATGGCGTCAT
CACCGTCAAGGATGGCAAGACCCTCACCGATGAGCTGGAGGTTATCGAGG
GCATGAAGTTCGATCGCGGCTACATCTCGCCGTACTTCATCAACTCCTCG
AAGGGCGCCAAGGTGGAGTTCCAAGATGCCCTCCTCCTGCTGTCCGAGAA
GAAGATCTCATCGGTGCAGAGCATCATTCCCGCTCTGGAGCTGGCCAATG
CGCAGCGCAAGCCGCTGGTCATCATTGCCGAGGATATCGATGGTGAGGCC
CTGAGCACCCTGGTGGTGAACCGCCTCAAGATCGGCCTTCAGGTGGCTGC
CGTCAAGGCACCCGGCTTCGGCGACAACCGCAAGAGCACCCTCACCGATA
TGGCCATCGCCTCCGGCGGCATTGTCTTCGGCGATGATGCTGATCTCGTC
AAGCTGGAGGACGTCAAGGTTAGCGATTTGGGCCAGGTCGGCGAGGTGGT
GATCACCAAGGACGACACCCTGCTGCTGAAGGGCAAGGGCAAGAAGGACG
ATGTGCTCCGTCGCGCCAATCAGATCAAGGACCAGATCGAGGACACCACC
TCCGAGTACGAGAAGGAGAAGCTGCAGGAGCGTCTGGCCCGCTTGGCCTC
CGGCGTTGCCCTGCTGCGCGTTGGCGGCTCCAGCGAGGTGGAGGTCAACG
AGAAGAAGGATCGCGTCCACGATGCCCTGAACGCCACCCGTGCTGCCGTC
GAAGAGGGAATCGTTCCCGGAGGCGGCACCGCTCTGCTCCGTTGCATTGA
GAAGCTCGAGGGTGTCGAGACCACCAACGAGGATCAGAAACTCGGCGTGG
AGATTGTGCGTCGTGCCCTGCGCATGCCATGCATGACGATTGCCAAGAAC
GCCGGCGTTGATGGCGCCATGGTGGTGGCCAAGGTGGAGAACCAGGCCGG
TGACTACGGCTACGATGCGCTGAAGGGCGAATACGGCAACCTGATCGAGA
AGGGCATCATCGATCCCACCAAGGTGGTGCGCACCGCCATCACAGACGCC
TCCGGTGTGGCCTCACTGCTGACCACCGCCGAGGCTGTCGTCACCGAGAT
CCCCAAGGAGGATGGCGCTCCTGCCATGCCCGGCATGGGTGGTATGGGCG
GCATGGGAGGCATGGGCGGCATGGGTGGCATGATGTAAAAGCTTTCTAGA
CCAT
BS21779.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:33:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hsp60-RB | 1722 | CG12101-PB | 1..1722 | 17..1738 | 8520 | 99.7 | Plus |
| Hsp60-RA | 1722 | CG12101-PA | 1..1722 | 17..1738 | 8520 | 99.7 | Plus |
| Hsp60C-RB | 1731 | CG7235-PB | 75..1644 | 79..1648 | 2855 | 78.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:33:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hsp60-RB | 2328 | CG12101-RB | 124..1845 | 17..1738 | 8520 | 99.7 | Plus |
| Hsp60-RA | 2357 | CG12101-RA | 153..1874 | 17..1738 | 8520 | 99.7 | Plus |
| Hsp60C-RB | 2029 | CG7235-RB | 214..1783 | 79..1648 | 2855 | 78.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:33:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11110041..11111411 | 17..1387 | 6780 | 99.6 | Plus |
| 2L | 23513712 | 2L | 5669023..5670592 | 79..1648 | 2855 | 78.8 | Plus |
| X | 23542271 | X | 11111472..11111825 | 1385..1738 | 1755 | 99.7 | Plus |
| 2L | 23513712 | 2L | 728571..728957 | 86..472 | 630 | 77.5 | Plus |
| 2L | 23513712 | 2L | 729902..730135 | 1414..1647 | 330 | 76.1 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:33:32 has no hits.
BS21779.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-14 17:48:18 Download gff for
BS21779.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsp60-RB | 129..1843 | 22..1736 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:56:52 Download gff for
BS21779.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsp60-RA | 158..1872 | 22..1736 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:27:50 Download gff for
BS21779.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsp60-RA | 158..1872 | 22..1736 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:27:50 Download gff for
BS21779.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11110046..11111411 | 22..1387 | 99 | -> | Plus |
| X | 11111475..11111823 | 1388..1736 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:56:52 Download gff for
BS21779.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11004079..11005444 | 22..1387 | 99 | -> | Plus |
| arm_X | 11005508..11005856 | 1388..1736 | 99 | | Plus |
BS21779.pep Sequence
Translation from 16 to 1737
> BS21779.pep
MFRLPVSLARSSISRQLAMRGYAKDVRFGPEVRAMMLQGVDVLADAVAVT
MGPKGRNVIIEQSWGSPKITKDGVTVAKSIELKDKFQNIGAKLVQDVANN
TNEEAGDGTTTATVLARAIAKEGFEKISKGANPVEIRRGVMLAVETVKDN
LKTMSRPVSTPEEIAQVATISANGDQAIGNLISEAMKKVGRDGVITVKDG
KTLTDELEVIEGMKFDRGYISPYFINSSKGAKVEFQDALLLLSEKKISSV
QSIIPALELANAQRKPLVIIAEDIDGEALSTLVVNRLKIGLQVAAVKAPG
FGDNRKSTLTDMAIASGGIVFGDDADLVKLEDVKVSDLGQVGEVVITKDD
TLLLKGKGKKDDVLRRANQIKDQIEDTTSEYEKEKLQERLARLASGVALL
RVGGSSEVEVNEKKDRVHDALNATRAAVEEGIVPGGGTALLRCIEKLEGV
ETTNEDQKLGVEIVRRALRMPCMTIAKNAGVDGAMVVAKVENQAGDYGYD
ALKGEYGNLIEKGIIDPTKVVRTAITDASGVASLLTTAEAVVTEIPKEDG
APAMPGMGGMGGMGGMGGMGGMM*
BS21779.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:10:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hsp60-PB | 573 | CG12101-PB | 1..573 | 1..573 | 2829 | 100 | Plus |
| Hsp60-PA | 573 | CG12101-PA | 1..573 | 1..573 | 2829 | 100 | Plus |
| Hsp60C-PB | 576 | CG7235-PB | 4..575 | 1..570 | 2325 | 81.2 | Plus |
| Hsp60C-PC | 576 | CG7235-PC | 4..575 | 1..570 | 2325 | 81.2 | Plus |
| Hsp60C-PA | 576 | CG7235-PA | 4..575 | 1..570 | 2325 | 81.2 | Plus |
