BS21788.complete Sequence
2732 bp assembled on 2011-02-14
GenBank Submission: KX804076
> BS21788.complete
GAAGTTATCAATCGACATGTCAGGCGCCAATCCCTTCGCCCAGTTCGAGA
AAACTTTCTCCCAGGCCGGCACAACATACAAGTACTTTGACCTCGCCTCC
ATCGATAGTAAATATGATCAACTGCCCTACTCGATCCGAGTGCTCTTGGA
GTCGGCGGTTCGCAACTGCGACAACTTCCATATCCTAGAGAAGGACGTGC
AGAGCATCCTGGGATGGTCGCCCGCCCTCAAGCAGGGATCCAACGATGTG
GAGGTGTCCTTCAAGCCGGCCCGTGTCATCCTGCAGGACTTTACTGGAGT
TCCTGCTGTGGTGGACTTTGCAGCTATGCGCGATGCTGTTTTGGATCTGG
GCGGCGACCCGGAGAAAATCAATCCCATCTGCCCCGCCGACTTGGTCATC
GATCACTCGGTCCAGGTGGACTTCGCCCGTGCGCCTGATGCTTTGGCCAA
GAACCAGTCACTGGAATTTGAGCGCAACAAGGAGCGCTTCACCTTCCTGA
AGTGGGGAGCCAAGGCCTTCAACAACATGCTGATCGTGCCACCTGGCTCC
GGTATTGTCCACCAGGTGAATCTGGAGTACTTGGCCCGCGTGGTGTTCGA
GAATGACGCAACCGATGGCTCCAAGATTCTGTATCCCGACAGTGTGGTGG
GCACTGATTCCCATACCACGATGATAAATGGATTGGGCGTACTTGGTTGG
GGAGTGGGAGGCATCGAAGCGGAAGCTGTGATGTTGGGCCAATCGATTTC
CATGTTGTTGCCCGAGGTAATTGGCTACAAGTTGGAGGGCAAACTGAGCC
CACTGGTCACATCCACCGATCTGGTGCTGACCATTACCAAGCACCTGCGA
CAGTTGGGTGTGGTGGGAAAGTTTGTGGAGTTTTACGGCCCGGGAGTTGC
GGAACTCAGCATTGCTGACAGGGCCACCATCAGCAATATGTGTCCCGAAT
ACGGAGCCACCGTGGGATACTTCCCCATCGATGAGAATACTCTTGGTTAC
ATGAAGCAGACAAATCGGTCTGAAAAGAAGATCGACATCATTCGCCAGTA
TCTGAAGGCAACTCAGCAGCTGCGCAACTATGCTGATGCGGCCCAAGATC
CCAAGTTTACTCAGAGTATCACCTTGGATCTGTCGACGGTGGTCACCTCC
GTTTCGGGACCCAAGCGTCCTCACGATCGCGTTTCTGTCTCCGACATGCC
TGAGGATTTTAAGTCGTGCCTGTCCAGCCCAGTGGGTTTCAAGGGATTCG
CCATTGCTCCGGAAGCTCAATCCGCTTTTGGGGAGTTCCAGTGGGATGAT
GGCAAGACCTACAAACTGCATCATGGATCTGTTGTCATTGCGGCCATCAC
ATCCTGCACGAACACATCGAATCCTTCGGTGATGCTGGGTGCCGGTCTGC
TGGCCAAAAAGGCCGTTGAGAAGGGTCTGAGCATCCTGCCCTATATCAAG
ACCTCGCTGTCGCCTGGATCCGGTGTGGTTACCTACTACCTGAAAGAGTC
CGGAGTCATTCCCTATCTGGAGAAGTTGGGCTTCGATATTGTGGGCTATG
GATGCATGACCTGCATTGGTAACTCCGGTCCTCTCGAGGAGAATGTGGTG
AACACCATCGAGAAGAACGGCCTCGTGTGTGCTGGAGTTTTGTCCGGAAA
CCGAAACTTCGAGGGTCGCATCCATCCCAACACCAGGGCCAACTATCTGG
CCAGTCCTCTGTTGGTGATCGCATATGCCATCGCAGGACGCGTGGACATC
GACTTCGAGAAGGAACCTCTGGGAGTGGATGCCAATGGCAAGAATGTGTT
CTTGCAGGACATCTGGCCAACGCGATCGGAGATCCAGGAGGTGGAGAACA
AGCATGTAATCCCCGCCATGTTCCAGGAGGTGTACAGCAAAATTGAGCTG
GGCTCCCAGGACTGGCAGACTCTGCAGGTGTCCGAGGGCAAGCTCTTCTC
CTGGAGTGCCGATTCCACCTACATTAAGCGACCACCCTTCTTCGAGGGCA
TGACCAGAGATCTTCCCAAGCTGCAGAGCATTCAGAAGGCACGTTGCCTG
CTCTTCCTAGGCGATTCCGTCACCACGGATCACATCTCGCCGGCTGGATC
TATTGCTAGAACCTCGCCTGCTGCCCGATTCTTGTCCGAGCGGAACATCA
CACCCCGTGACTTCAACTCGTACGGATCGCGTCGTGGCAACGATGCCATC
ATGTCGCGCGGCACCTTCGCCAACATTCGGTTGGTCAACAAACTGGTCGA
AAAGACAGGACCCCGCACCGTGCACATTCCCAGCCAGGAAGAGCTGGATA
TCTTCGATGCCGCCGAGCGGTACCGCGAGGAGGGTACTCCTCTGGTCCTC
GTTGTAGGCAAGGACTACGGCAGCGGAAGCTCTCGGGATTGGGCCGCCAA
GGGTCCCTTCCTGCTGGGCGTCAAGGCGGTGATCGCGGAGTCCTACGAGC
GCATTCATCGTTCCAACCTGGTGGGCATGGGCATCATTCCGCTGCAATTC
CTGCCGGGACAGAGTGCCGAGACATTGAACCTGACTGGCCGGGAGGTGTA
CAACATCGCCCTGCCAGAGAGCGGTTTAAAGCCGGGCCAGAAGATCCAAG
TGGAGGCTGATGGCACCGTCTTTGAGACTATTCTGCGCTTCGACACTGAG
GTGGACATCACCTACTACAAGAATGGTGGAATCCTCAACTACATGATTCG
CAAAATGCTCTCTTAAAAGCTTTCTAGACCAT
BS21788.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:37:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Irp-1B-RA | 2700 | CG6342-PA | 1..2700 | 17..2716 | 13440 | 99.9 | Plus |
| Irp-1A-RA | 2709 | CG4900-PA | 13..2702 | 23..2709 | 4790 | 78.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:37:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Irp-1B-RA | 2901 | CG6342-RA | 55..2754 | 17..2716 | 13440 | 99.9 | Plus |
| Irp-1A-RA | 2882 | CG4900-RA | 76..2765 | 23..2709 | 4790 | 78.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:36:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10408938..10409657 | 2606..1887 | 3585 | 99.9 | Minus |
| 3R | 32079331 | 3R | 10409716..10410371 | 1887..1232 | 3250 | 99.7 | Minus |
| 3R | 32079331 | 3R | 10410779..10411291 | 1013..501 | 2550 | 99.8 | Minus |
| 3R | 32079331 | 3R | 22722323..22723071 | 1887..1139 | 1555 | 80.5 | Minus |
| 3R | 32079331 | 3R | 22723332..22724054 | 1003..284 | 1525 | 81.1 | Minus |
| 3R | 32079331 | 3R | 22721437..22722259 | 2709..1887 | 1250 | 76.8 | Minus |
| 3R | 32079331 | 3R | 10411352..10411569 | 502..285 | 1090 | 100 | Minus |
| 3R | 32079331 | 3R | 10411628..10411799 | 287..116 | 860 | 100 | Minus |
| 3R | 32079331 | 3R | 10410429..10410559 | 1242..1112 | 625 | 98.5 | Minus |
| 3R | 32079331 | 3R | 10408765..10408877 | 2716..2604 | 565 | 100 | Minus |
| 3R | 32079331 | 3R | 10410616..10410716 | 1114..1014 | 505 | 100 | Minus |
| 3R | 32079331 | 3R | 10412620..10412715 | 116..21 | 480 | 100 | Minus |
| 3R | 32079331 | 3R | 22724117..22724283 | 287..121 | 340 | 80.2 | Minus |
| 3R | 32079331 | 3R | 22724359..22724454 | 116..21 | 195 | 80.2 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:37:00 has no hits.
BS21788.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-14 18:11:05 Download gff for
BS21788.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Irp-1B-RA | 102..2799 | 17..2714 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:58:10 Download gff for
BS21788.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Irp-1B-RA | 55..2752 | 17..2714 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:28:56 Download gff for
BS21788.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Irp-1B-RA | 55..2752 | 17..2714 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:28:56 Download gff for
BS21788.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10411629..10411798 | 117..286 | 100 | <- | Minus |
| 3R | 10412620..10412716 | 17..116 | 97 | | Minus |
| 3R | 10411352..10411567 | 287..502 | 100 | <- | Minus |
| 3R | 10408767..10408875 | 2606..2714 | 100 | <- | Minus |
| 3R | 10408939..10409657 | 1887..2605 | 99 | <- | Minus |
| 3R | 10409717..10410371 | 1232..1886 | 99 | <- | Minus |
| 3R | 10410440..10410556 | 1115..1231 | 100 | <- | Minus |
| 3R | 10410616..10410716 | 1014..1114 | 100 | <- | Minus |
| 3R | 10410779..10411289 | 503..1013 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:58:10 Download gff for
BS21788.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6234489..6234597 | 2606..2714 | 100 | <- | Minus |
| arm_3R | 6234661..6235379 | 1887..2605 | 99 | <- | Minus |
| arm_3R | 6235439..6236093 | 1232..1886 | 99 | <- | Minus |
| arm_3R | 6236162..6236278 | 1115..1231 | 100 | <- | Minus |
| arm_3R | 6236338..6236438 | 1014..1114 | 100 | <- | Minus |
| arm_3R | 6236501..6237011 | 503..1013 | 99 | <- | Minus |
| arm_3R | 6237074..6237289 | 287..502 | 100 | <- | Minus |
| arm_3R | 6237351..6237520 | 117..286 | 100 | <- | Minus |
| arm_3R | 6238342..6238438 | 17..116 | 97 | | Minus |
BS21788.pep Sequence
Translation from 16 to 2715
> BS21788.pep
MSGANPFAQFEKTFSQAGTTYKYFDLASIDSKYDQLPYSIRVLLESAVRN
CDNFHILEKDVQSILGWSPALKQGSNDVEVSFKPARVILQDFTGVPAVVD
FAAMRDAVLDLGGDPEKINPICPADLVIDHSVQVDFARAPDALAKNQSLE
FERNKERFTFLKWGAKAFNNMLIVPPGSGIVHQVNLEYLARVVFENDATD
GSKILYPDSVVGTDSHTTMINGLGVLGWGVGGIEAEAVMLGQSISMLLPE
VIGYKLEGKLSPLVTSTDLVLTITKHLRQLGVVGKFVEFYGPGVAELSIA
DRATISNMCPEYGATVGYFPIDENTLGYMKQTNRSEKKIDIIRQYLKATQ
QLRNYADAAQDPKFTQSITLDLSTVVTSVSGPKRPHDRVSVSDMPEDFKS
CLSSPVGFKGFAIAPEAQSAFGEFQWDDGKTYKLHHGSVVIAAITSCTNT
SNPSVMLGAGLLAKKAVEKGLSILPYIKTSLSPGSGVVTYYLKESGVIPY
LEKLGFDIVGYGCMTCIGNSGPLEENVVNTIEKNGLVCAGVLSGNRNFEG
RIHPNTRANYLASPLLVIAYAIAGRVDIDFEKEPLGVDANGKNVFLQDIW
PTRSEIQEVENKHVIPAMFQEVYSKIELGSQDWQTLQVSEGKLFSWSADS
TYIKRPPFFEGMTRDLPKLQSIQKARCLLFLGDSVTTDHISPAGSIARTS
PAARFLSERNITPRDFNSYGSRRGNDAIMSRGTFANIRLVNKLVEKTGPR
TVHIPSQEELDIFDAAERYREEGTPLVLVVGKDYGSGSSRDWAAKGPFLL
GVKAVIAESYERIHRSNLVGMGIIPLQFLPGQSAETLNLTGREVYNIALP
ESGLKPGQKIQVEADGTVFETILRFDTEVDITYYKNGGILNYMIRKMLS*
BS21788.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:10:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Irp-1B-PA | 899 | CG6342-PA | 1..899 | 1..899 | 4634 | 100 | Plus |
| Irp-1A-PA | 902 | CG4900-PA | 4..901 | 2..898 | 4122 | 87.6 | Plus |
| Acon-PF | 787 | CG9244-PF | 99..782 | 83..893 | 493 | 26.8 | Plus |
| Acon-PE | 787 | CG9244-PE | 99..782 | 83..893 | 493 | 26.8 | Plus |
| Acon-PD | 787 | CG9244-PD | 99..782 | 83..893 | 493 | 26.8 | Plus |
