BS21795.complete Sequence
1007 bp assembled on 2011-03-18
GenBank Submission: KX800712
> BS21795.complete
GAAGTTATCAGTCGACATGATGAAGAAGTTACTAAGCAACGGCTCGAACA
AAAATAAAACTCTTAAGTTCGACGAGGGAATCAATTTGGACCAAATAATT
GCAAAGCTAAAACTAATCGGAGAGATAGGATCCGTGGTTCAGATTTCCGT
CCGGGAAATCGAAGCGGTTTGTTCTCGGGCCAGGGAAGTACTGCTCAAAC
AGCCAACTCTGCTGGAGATTCCTGCTCCGATTAATTTACTGGGAGACATA
CACGGTCAGTACCTAAATCTCTTGCGCTATTTCGAGTCCAATGGCTATCC
GCCGGATTCGGTGTATCTGCTACTGGGTGATTATGTGGACAGAGGCAAGC
AGTCCATCGAAACATTGACCCTGCTACTGGCCCTCAAGGCAAGGTATCCG
ACCAAGTTCTACCTACTAAGAGGAAACCACGAGTGCTCCAGTATAAATCA
CTTCTACGGATTCTACGACGAGTGCAAAAGGCGATACACGGTGAAGTTGT
GGCGCACTTTTGTAGATTGCTACAACTGCCTGCCACTGGCGGCGATCATC
GAGGAGAATATCTTCTGTTGCCACGGCGGTCTGAGTCCCCATCTGTTTAG
CATGCAGCAGATACGGGAAATTCGCCGGCCCATCGAAATACCGGAATCCG
GATTGATATGCGATATTCTGTGGTCCGACCCTGATCTGCGGATCATGGGC
TGGGGTCCCAACGAAAGGGGCGTGAGCCACACCTTCGGTTCAGATGTGGT
CAGTGCCTTCTTGCACCGATTCAAATTGAACCTCATTTGTCGGGGTCACC
AGGTGGTCGAGGATGGCTACGAGTTCTTCGCCAAGCGCCAGCTGATCACA
ATTTTCTCGGCCCCAAACTACTGCGGGGAGTTCGATAATGCTGGGGCCAT
GATGTGCATCAATCAGGATTTGTTGTGCACCTTTCGAGTTCAGAGGCCAA
TACTATCGGAGCAGAGGAGACTATCAGATATAAGTGTTTAAAAGCTTTCT
AGACCAT
BS21795.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:36:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PpN58A-RA | 975 | CG3245-PA | 1..975 | 17..991 | 4875 | 100 | Plus |
| Pp1-87B-RA | 909 | CG5650-PA | 364..844 | 425..905 | 470 | 73.2 | Plus |
| Pp1alpha-96A-RB | 984 | CG6593-PB | 364..844 | 425..905 | 425 | 72.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:36:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PpN58A-RA | 1182 | CG3245-RA | 86..1061 | 17..992 | 4880 | 100 | Plus |
| Pp1-87B-RA | 2203 | CG5650-RA | 593..1073 | 425..905 | 470 | 73.2 | Plus |
| Pp1alpha-96A-RB | 3210 | CG6593-RB | 753..1233 | 425..905 | 425 | 72.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:36:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21881473..21882448 | 992..17 | 4880 | 100 | Minus |
| 3R | 32079331 | 3R | 12424845..12425325 | 905..425 | 470 | 73.2 | Minus |
| 2R | 25286936 | 2R | 22041989..22042067 | 875..797 | 290 | 91.1 | Minus |
| 2L | 23513712 | 2L | 3110183..3110325 | 453..595 | 280 | 79.7 | Plus |
| X | 23542271 | X | 15359494..15359593 | 905..806 | 260 | 84 | Minus |
| 3R | 32079331 | 3R | 24519974..24520079 | 780..885 | 245 | 82.1 | Plus |
| Y | 3667352 | Y | 3539745..3539868 | 905..782 | 230 | 79 | Minus |
| 3R | 32079331 | 3R | 24519597..24519751 | 461..615 | 220 | 76.1 | Plus |
| X | 23542271 | X | 15359811..15359971 | 588..428 | 220 | 75.8 | Minus |
| X | 23542271 | X | 10406764..10406897 | 461..594 | 205 | 76.9 | Plus |
| 2R | 25286936 | 2R | 17955680..17955755 | 876..801 | 200 | 84.2 | Minus |
| 2L | 23513712 | 2L | 3110527..3110600 | 797..870 | 190 | 83.8 | Plus |
| Y | 3667352 | Y | 10580..10698 | 788..906 | 190 | 77.3 | Plus |
| 2R | 25286936 | 2R | 22042269..22042398 | 595..466 | 185 | 76.2 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:36:11 has no hits.
BS21795.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-18 12:09:31 Download gff for
BS21795.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PpN58A-RA | 86..1058 | 17..989 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:38:24 Download gff for
BS21795.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PpN58A-RA | 86..1058 | 17..989 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:56:25 Download gff for
BS21795.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PpN58A-RA | 86..1058 | 17..989 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:56:25 Download gff for
BS21795.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21881476..21882448 | 17..989 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:38:24 Download gff for
BS21795.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17768981..17769953 | 17..989 | 100 | | Minus |
BS21795.pep Sequence
Translation from 16 to 990
> BS21795.pep
MMKKLLSNGSNKNKTLKFDEGINLDQIIAKLKLIGEIGSVVQISVREIEA
VCSRAREVLLKQPTLLEIPAPINLLGDIHGQYLNLLRYFESNGYPPDSVY
LLLGDYVDRGKQSIETLTLLLALKARYPTKFYLLRGNHECSSINHFYGFY
DECKRRYTVKLWRTFVDCYNCLPLAAIIEENIFCCHGGLSPHLFSMQQIR
EIRRPIEIPESGLICDILWSDPDLRIMGWGPNERGVSHTFGSDVVSAFLH
RFKLNLICRGHQVVEDGYEFFAKRQLITIFSAPNYCGEFDNAGAMMCINQ
DLLCTFRVQRPILSEQRRLSDISV*
BS21795.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:07:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PpN58A-PA | 324 | CG3245-PA | 1..324 | 1..324 | 1715 | 100 | Plus |
| Pp1alpha-96A-PB | 327 | CG6593-PB | 5..301 | 22..318 | 1069 | 62.9 | Plus |
| Pp1alpha-96A-PA | 327 | CG6593-PA | 5..301 | 22..318 | 1069 | 62.9 | Plus |
| Pp1-13C-PA | 302 | CG9156-PA | 3..297 | 20..312 | 1066 | 63.4 | Plus |
| Pp1-87B-PA | 302 | CG5650-PA | 5..296 | 22..311 | 1058 | 63 | Plus |
