BS21806.complete Sequence
2174 bp assembled on 2011-02-18
GenBank Submission: KX805149
> BS21806.complete
GAAGTTATCAGTCGACATGGAACAGGCCGAATTGGGCAGTACGTGCCTTG
CAGCGCCTAAGCGCCGCTTCCCGGACAACGAACGTTGTGGGCGGGAGCTG
GCCGCCGTGCCCGTGCAGCCAGTGCTGCCACAAATCCCTACCGAGGAGGA
GCCGGAGATAAAACAGCGCAAAAGGGAGAAGGAGCATAAGGAATCCCTCG
ACCGGGAAACGGAGTGCAACCTCATGGACTTCTGTGATGAGCTGCTCTTC
GAGATCTTCCAGTACCTGGACACGTCCTCCATTCTGGCGGTGATGCATTG
CTCGCCGCGCTTTGAAAACCTCCTGCTGGATCACCGCTTCTATCATCACA
TAGACTTAAGCAACGGGCCCCTGCCTATGGGCATCCTAGAAGAGATTCTT
GGACGAGCCACCGAAAAGACACACACCATTAAAATCTGCGGACCTCCGTC
CTCGCAGCATGTTGCAGGCGAATTCCGCCAGTTCACCCAAACGCTAAGCT
CCGTTTTCCCCAGGGTTGTACAGCTTAAAGTGCTGGAGCTGGAGGGCGTC
AGCCTGGACTTCGAATACATACACATAACTGAGTTCCCGGCCACTCTGAG
GCGTCTGAAGCTAAAGGACTGTAGCGTTAGGGTCGGCGACACGCCAAAAA
GCATATTTTACTCCATAGAGCTGCATCTGCTTGATCTAGAGGATCTCAGT
ATTGAGGACAACAGCTGGTTCGAGCCCTATTATATTATGGGCCTGTCGAA
GTTACCTTCCTTGCGGCGTCTTAGTCTTAAGGGCTGTCAGGCGCTATGCA
AGTTTGTGCCCTATGGCAGCATGGCGGCACGTTTCGGTTTCCAAAAACTA
GAGTCACTAGATCTTCGCCAGACGCCCATCAACAACTCAGATCTGCAGTG
TTTTAGCGCTATCGAGAATCTCAAGGAACTGCTGCTTGAGTCGCCACAGA
TCCTGCACTCCAAACAAGCCGTTGCTAAAAAAAATACCAACGGCAACGCC
ACTGACGAAGCTGCTTCCCCGCAGCCTGATTCACTGAAAGTGCTTAGCGA
TGACGAGCCGTCCACATCGCGGGCCGCCATGGAGCATCTGCGTGCATGCA
AGGTTGCGTTCAATTTGGACAACTGCAGCGATAGAAAGGAGGAGAAGTCG
CCGGTGCCAACTGAGCCTCCTTCGGAGGGTCAGGATCTTCAGGCGAAACG
AATACGAGCACCATCAGAATCCGATGATGAGGACACATCATCCACCTCAG
GGTCTTCGTCGGACAAATTGGAGGTTTTATCGTTGCCCAGAAATGGTCAT
AGCAACGCTGCACCTTTGAGCGGAGGCGTCGACTTGCCGCCACTTCCGCA
TGCAGCCGATGCAGCCAATGCAGCCGATGCACCAATTGCAGTTGATGCAG
CCAATATCGAGGCTCCCGGGCAGAGTCCCGGCTTGGATCCTAGACCCCCG
CGCGCTTACATCTACGTGCCCGACGCTGAGAACGCTAACCCGCGCCAACA
GCGTAGTGTTGTGGCCGTATTTGCGCAGGGAACGGAGCAACGGTATATCT
ATGTCAATCAACAATTCTCACTCCCGATGAATGTTCTGATGCCGACGCGA
CGCCATCGTACGCATCCGCGTCCGAACTACGATCAGGTTGTTCAGCATCC
GATGTTTTGGAACATGCTCGAGCCACTGGATCGCGACTATGCTCGACGAG
TGCGCCCACGTCCGCCTTCCTGTCAGACAACACCTCAATACTATGTCACC
GATCGGGCGATGTATAGCTTTGGCCGAGCTGATCGACCGGTGCAACCGGA
CGTTGTCTGGATCCGGAACATCAATCGCTCGCCAGACAATAAACTGGAGC
GACTGTCGTTGCGAAACTACCATCTCATCACAAATCATACCCTGGAGCAC
CTGGTGCAGTGCTCTCCGAATCTGGTGTATATCGATGTTAGTGGCACCAG
CATTACGCTTCCGGCAATTCGGCGCTTCAAGATCTCCAAACCGAAATGCG
AAGTGGTCGCCAATCACTTGGAGGAGTTTGAAAGACTTCCGGAGCTGGAG
ACACAGGAAGAGGATGACACGGTGGTGGTGATGCTGCAGCCACCGCCGCG
CGCCGACGACGAGCAGCCACCGAAATCGCCACCGCCACAGGAGGTGGTGG
CTCCTTAGAAGCTTTCTAGACCAT
BS21806.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:25:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5003-RA | 2142 | CG5003-PA | 1..2142 | 17..2158 | 10710 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:25:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5003-RA | 2491 | CG5003-RA | 88..2232 | 16..2160 | 10725 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:25:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27914036..27915344 | 2160..852 | 6545 | 100 | Minus |
| 3R | 32079331 | 3R | 27916148..27916429 | 297..16 | 1410 | 100 | Minus |
| 3R | 32079331 | 3R | 27915792..27916062 | 568..298 | 1355 | 100 | Minus |
| 3R | 32079331 | 3R | 27915396..27915559 | 853..690 | 820 | 100 | Minus |
| 3R | 32079331 | 3R | 27915610..27915733 | 692..569 | 620 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:25:38 has no hits.
BS21806.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-18 10:40:44 Download gff for
BS21806.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5003-RA | 100..2241 | 17..2158 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:52:42 Download gff for
BS21806.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5003-RA | 100..2241 | 17..2158 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:12:52 Download gff for
BS21806.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5003-RA | 89..2230 | 17..2158 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:12:52 Download gff for
BS21806.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27914038..27915342 | 854..2158 | 100 | <- | Minus |
| 3R | 27915396..27915557 | 692..853 | 100 | <- | Minus |
| 3R | 27915611..27915733 | 569..691 | 100 | <- | Minus |
| 3R | 27915792..27916062 | 298..568 | 100 | <- | Minus |
| 3R | 27916148..27916428 | 17..297 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:52:42 Download gff for
BS21806.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23739760..23741064 | 854..2158 | 100 | <- | Minus |
| arm_3R | 23741118..23741279 | 692..853 | 100 | <- | Minus |
| arm_3R | 23741333..23741455 | 569..691 | 100 | <- | Minus |
| arm_3R | 23741514..23741784 | 298..568 | 100 | <- | Minus |
| arm_3R | 23741870..23742150 | 17..297 | 100 | | Minus |
BS21806.pep Sequence
Translation from 16 to 2157
> BS21806.pep
MEQAELGSTCLAAPKRRFPDNERCGRELAAVPVQPVLPQIPTEEEPEIKQ
RKREKEHKESLDRETECNLMDFCDELLFEIFQYLDTSSILAVMHCSPRFE
NLLLDHRFYHHIDLSNGPLPMGILEEILGRATEKTHTIKICGPPSSQHVA
GEFRQFTQTLSSVFPRVVQLKVLELEGVSLDFEYIHITEFPATLRRLKLK
DCSVRVGDTPKSIFYSIELHLLDLEDLSIEDNSWFEPYYIMGLSKLPSLR
RLSLKGCQALCKFVPYGSMAARFGFQKLESLDLRQTPINNSDLQCFSAIE
NLKELLLESPQILHSKQAVAKKNTNGNATDEAASPQPDSLKVLSDDEPST
SRAAMEHLRACKVAFNLDNCSDRKEEKSPVPTEPPSEGQDLQAKRIRAPS
ESDDEDTSSTSGSSSDKLEVLSLPRNGHSNAAPLSGGVDLPPLPHAADAA
NAADAPIAVDAANIEAPGQSPGLDPRPPRAYIYVPDAENANPRQQRSVVA
VFAQGTEQRYIYVNQQFSLPMNVLMPTRRHRTHPRPNYDQVVQHPMFWNM
LEPLDRDYARRVRPRPPSCQTTPQYYVTDRAMYSFGRADRPVQPDVVWIR
NINRSPDNKLERLSLRNYHLITNHTLEHLVQCSPNLVYIDVSGTSITLPA
IRRFKISKPKCEVVANHLEEFERLPELETQEEDDTVVVMLQPPPRADDEQ
PPKSPPPQEVVAP*
BS21806.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:04:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5003-PA | 713 | CG5003-PA | 1..713 | 1..713 | 3744 | 100 | Plus |
