BS21809.complete Sequence
1316 bp assembled on 2011-02-01
GenBank Submission: KX804720
> BS21809.complete
GAAGTTATCAGTCGACATGAGGCAACTATTCAGACGCTTGATGAACCACC
AGTATTTGACGCAGGACCAGATCAATGGGTTCGACAACTACAAGTACAGT
GCCATTGATACCTCACCGCTGAGTCAGTATGTGATGCATCCCTTTTGGGA
TTGGCTAGTTAAGTTCTTTCCGCGCTGGTTTGCGCCCAACCTGATGACCT
TTCTGGGCTTCCTGTTCAGCGCCATGAACCTGGTGCTGCTCTCCTACTAC
GACTGGAACTTTGATGCGAGTTCCGGCGAGGAGGGCACCACCCCCATTCC
GTCGTGGGTCTGGCTCTGCACGGCCATCAACATCTTTTTAGCCTACACCC
TGGACGGGATCGATGGCAAGCAGGCCCGCCGCATTGGATTATCTGGTCCG
CTGGGCGAGCTCTTCGATCACGGTTTGGATTCATATACCGCCATGTTGAT
CCCGACGTGCCTGTACAGCATTTTTGGACGCAGTCGCGTGTATTCGGTGC
GACCCATGAGGATGTACTACGTATGCCTAACGGTCTACTTCAACTTCTTC
ATTTCGCACTGGGAGAAGTACAACACGGGCATCCTCTATCTGCCCTGGGG
CTATGACCTCAGCATGTGGGGGAGCACCGCCATGTACCTGGTCACCTGGT
GGATGGGCTTCGAGCGCTGGAAGTTCGAACTGCCGCTGGGATCCTACGGA
ACCCTACCATTGGGCAATGTCATGGAGGCAGTGCTGCATGTCAGTGCTAT
GGCGAATCTTCCACTAGTCATAATTAATGTCTACAACTCTTATGCGCATC
GCACAGGTCGTCTGTTGTCCTTTTGGGAGGCCGTTCGGCCCATGTGGCCC
TTCATCACCTACTTCGTCATACTGCTCGCCTGGCCATATGTATCGCCGAA
CGACATCATGGAAAAGGATCCACGCGCTATTTTCATGCTTAGCGGCACAA
TCTTTTCCAACGTCAGCTGTCGTTTAATTGTCTCCCAGATGTCCGTGACG
AGATGCGAGGCCTGGCATTGGCAGACGCCTATGTTTATCCTTTCCTTCTT
GACGAGCCTGTGGATTCCGCTACTGGAGAGGCCGTTGCTATACTTGCTTC
TAATTGTGACCACGCTGAGCCACTGGCAATACGGGGCCAGCGTGGTAAAC
CAGATGTGCGAGCATTTCAACCGGGTCTGCTTCACGGTCCATAAGCGAGT
GCCGCAGGAGGAGCTCCCCAAGAAGAAGACTCTGCTGGCAGAGGAAATCA
GCCAGGCAGATAAGCCACAAGCGGAGGAGCCATTGAAGAAAGATATATAA
AAGCTTTCTAGACCAT
BS21809.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:47:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33116-RA | 1284 | CG33116-PA | 1..1284 | 17..1300 | 6420 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:47:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33116-RA | 2512 | CG33116-RA | 331..1614 | 17..1300 | 6420 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:47:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19534301..19534925 | 162..786 | 3125 | 100 | Plus |
| 2L | 23513712 | 2L | 19536133..19536465 | 968..1300 | 1665 | 100 | Plus |
| U | 3151297 | U | 2744410..2744695 | 162..447 | 1430 | 100 | Plus |
| 2L | 23513712 | 2L | 19534979..19535159 | 787..967 | 905 | 100 | Plus |
| 2L | 23513712 | 2L | 19533809..19533886 | 17..94 | 390 | 100 | Plus |
| 2L | 23513712 | 2L | 19534148..19534218 | 93..163 | 355 | 100 | Plus |
| U | 3151297 | U | 2744257..2744327 | 93..163 | 355 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:47:37 has no hits.
BS21809.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-14 14:31:56 Download gff for
BS21809.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33116-RA | 337..1618 | 17..1298 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:34:13 Download gff for
BS21809.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33116-RA | 331..1612 | 17..1298 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:09:46 Download gff for
BS21809.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33116-RA | 331..1612 | 17..1298 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:09:46 Download gff for
BS21809.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19533809..19533886 | 17..94 | 100 | -> | Plus |
| 2L | 19534150..19534218 | 95..163 | 100 | -> | Plus |
| 2L | 19534303..19534925 | 164..786 | 100 | -> | Plus |
| 2L | 19534979..19535159 | 787..967 | 100 | -> | Plus |
| 2L | 19536133..19536463 | 968..1298 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:34:13 Download gff for
BS21809.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19533809..19533886 | 17..94 | 100 | -> | Plus |
| arm_2L | 19534150..19534218 | 95..163 | 100 | -> | Plus |
| arm_2L | 19534303..19534925 | 164..786 | 100 | -> | Plus |
| arm_2L | 19534979..19535159 | 787..967 | 100 | -> | Plus |
| arm_2L | 19536133..19536463 | 968..1298 | 100 | | Plus |
BS21809.pep Sequence
Translation from 16 to 1299
> BS21809.pep
MRQLFRRLMNHQYLTQDQINGFDNYKYSAIDTSPLSQYVMHPFWDWLVKF
FPRWFAPNLMTFLGFLFSAMNLVLLSYYDWNFDASSGEEGTTPIPSWVWL
CTAINIFLAYTLDGIDGKQARRIGLSGPLGELFDHGLDSYTAMLIPTCLY
SIFGRSRVYSVRPMRMYYVCLTVYFNFFISHWEKYNTGILYLPWGYDLSM
WGSTAMYLVTWWMGFERWKFELPLGSYGTLPLGNVMEAVLHVSAMANLPL
VIINVYNSYAHRTGRLLSFWEAVRPMWPFITYFVILLAWPYVSPNDIMEK
DPRAIFMLSGTIFSNVSCRLIVSQMSVTRCEAWHWQTPMFILSFLTSLWI
PLLERPLLYLLLIVTTLSHWQYGASVVNQMCEHFNRVCFTVHKRVPQEEL
PKKKTLLAEEISQADKPQAEEPLKKDI*
BS21809.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:05:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33116-PA | 427 | CG33116-PA | 1..427 | 1..427 | 2330 | 100 | Plus |
| CG7149-PC | 415 | CG7149-PC | 5..393 | 12..397 | 1012 | 48.1 | Plus |
| CG7149-PA | 415 | CG7149-PA | 5..393 | 12..397 | 1012 | 48.1 | Plus |
| CG7149-PB | 414 | CG7149-PB | 5..398 | 12..400 | 1011 | 47.8 | Plus |
| bbc-PB | 417 | CG6016-PB | 12..375 | 14..391 | 343 | 26.4 | Plus |
