BS21812.complete Sequence
1910 bp assembled on 2011-02-18
GenBank Submission: KX800883
> BS21812.complete
GAAGTTATCAGTCGACATGTCGCGCAAAATGTTGCAAGTGCCGGTAGCAA
CACTTGTGTTGCTGTCGCTGCTGCCGATTGCCCATGTTGCTGCTGCCTCA
GCCACTGCCGCAGATGCAACAGCAGCAACTGCAGCATCCACAACGTCAAC
CGGAATCGATGCCAGCCTGAAGAATGCCAAGCTGATTGAGGCCAAAGTGC
TGCCCGACTTGGCCATCCTGCAACGCGTTAACCAGGAAGACGAAAAGTGG
CAGCAGGTCTACCGGTTCATCGACGATGGCTTTCCCGTCCTCGAGTTGTA
CGGCTACAAGCCGCTACCAGACCTGCCGTACACGTTGATTGTGCCCAAAA
TCGATGTGCGGAGCATTGAGAAGCCGCGACTGAAGGAGTTCATGTTGGAA
CATGTGGTGCCTGGGAAAATCTTCGACAGCTACAATGGTAATGGGAACAG
CAAGGAGGAGGAGGAGTCCTTCGGCAATGGGAACGGACACAAAATCGTTT
TCCGTAAATTGGAAAAATCCCACAACAATGTTTGGCTACTCAATGGCCAG
CAAATACTCCACAAGCTGCGTATCAATGAGAACCTGATGGCCATTGCAAT
TGATGGTTATTTGGGCGATAGGAAGTCGCCCTACTCCAAGCGCAATATCC
AGGAAACGAACAACCGCTACAACGACCCTCAGCCGCTGGAGCAGCCGAAC
ATTACGAATGCACATGCAAAGGTGGAGCCCGTTATCAAGGAGTCGAAGGC
CAGTCCGCTGATGTCCTTTTTGGCAAACATGAAGACCGGCACCAAGGTCT
TCCAGCACTTCCTCTCCAAGAGCAATCTGACCCGCATCATGGACGACAAC
GCGTATACGGTGCTGATTCCGTCGGACAACGCCTTCCAGCGCTGGCATCC
CATCGACTGGGGATTCTATCCGTTTTCCGTGCCGGAATTCACTGAGTCGG
TGCTTAGAAACCATTTCCTGCCCATGCAGCGACCCCTGCGGCTGGCCGAT
GTTCGGAACATGGACGAGGTCGTCGTGACCACCATGGGTGGCGAGGATGT
CGTCTTCCACGGCCAACCCACCCCCACGGTGAATAATGTGAGCATTATGT
CCGACTACAACCTCTCCAATGGCAATCAGGTGTTCATTATCTCCGAGGTG
CTCTTCGTCACGGAAGCTGTCGTCTCCAAATTGCACCAGATGCACAAGGA
TAAGGAGACACCTCCGTTGCTGGCATTCCCCTGGTTTGGAGCACAGTTCC
TTTCCCATTCATTTTTGGCCTTGGAGAGAGATCCACGATTTACCCAGATT
ACCAGATATTTGAACAGTGCCGAGATCGCCCCCCACATTTCCGGCGCCAA
TTACACGTTCTTTGTGCCAGAGGATCGGGCCTTCGAGAAGCAAGGATTCG
ACAAGCTATCAGATGAGGTCATGGCCTCACAACGCGGCGTAAAAATGCTG
CTGAACCACTTCGTTAAGGGACGACTGTATAACCGTGATCTGCGCGACAA
TGAAGTCTTTGAGACGATCGGCGGAGGCCACATTAAGATCACCCGTAACC
CGGGTAGCAACTATACCAGCGTCAATAATGCCCAGATTACGGAGAGCGAG
GTGTTCGTATACAACTTGGGCACCATGTACTACCTGGACGACATCCTGTA
CTCGCACATGCTGCGCGACTTCGTAAGCAAGTCCACCAAGACGAGATCCA
ATCGGCACGGCAGCGATTCCGGCGGAGGATCACGGAGCACCTCGCGGCCC
AGCGACGTGGAAATCGTGCCCAACGAGTTCGAGGGGGAGCACAATGGCGG
CGACTATGCCATCCACGGTGATGACGAGGACTTCGAGGATGAGATTATCA
CGCCCAAGGCGCTGCCCGTCCAGATCTATGAGTTGCCCAAGTAAAAGCTT
TCTAGACCAT
BS21812.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:20:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5758-RF | 1878 | CG5758-PF | 1..1878 | 17..1894 | 9390 | 100 | Plus |
| CG5758-RE | 1878 | CG5758-PE | 1..1878 | 17..1894 | 9390 | 100 | Plus |
| CG5758-RD | 1878 | CG5758-PD | 1..1878 | 17..1894 | 9390 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:20:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5758-RF | 3127 | CG5758-RF | 332..2210 | 17..1895 | 9395 | 100 | Plus |
| CG5758-RE | 3262 | CG5758-RE | 467..2345 | 17..1895 | 9395 | 100 | Plus |
| CG5758-RD | 3193 | CG5758-RD | 398..2276 | 17..1895 | 9395 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:20:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18128473..18128945 | 1423..1895 | 2365 | 100 | Plus |
| 2L | 23513712 | 2L | 18127466..18127869 | 664..1067 | 2020 | 100 | Plus |
| 2L | 23513712 | 2L | 18126494..18126839 | 318..663 | 1730 | 100 | Plus |
| 2L | 23513712 | 2L | 18123605..18123908 | 17..320 | 1520 | 100 | Plus |
| 2L | 23513712 | 2L | 18127945..18128066 | 1068..1189 | 610 | 100 | Plus |
| 2L | 23513712 | 2L | 18128300..18128420 | 1304..1424 | 605 | 100 | Plus |
| 2L | 23513712 | 2L | 18128129..18128246 | 1188..1305 | 590 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 08:20:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2346..2429 | 99..180 | 136 | 64.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2766..2842 | 93..170 | 135 | 65.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6778..6871 | 89..180 | 132 | 61.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1084..1145 | 89..150 | 130 | 67.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1096..1157 | 89..150 | 130 | 67.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2781..2896 | 93..207 | 126 | 61 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3282..3371 | 108..196 | 123 | 62.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6776..6831 | 99..154 | 118 | 67.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2359 | 101..154 | 117 | 68.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2381 | 99..155 | 114 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6444..6568 | 27..152 | 114 | 56.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6845..6901 | 93..149 | 114 | 66.7 | Plus |
BS21812.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-18 10:39:43 Download gff for
BS21812.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5758-RC | 303..2178 | 17..1892 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:09:40 Download gff for
BS21812.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5758-RD | 398..2273 | 17..1892 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:16:09 Download gff for
BS21812.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5758-RD | 398..2273 | 17..1892 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:16:09 Download gff for
BS21812.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18123605..18123908 | 17..320 | 100 | -> | Plus |
| 2L | 18126497..18126839 | 321..663 | 100 | -> | Plus |
| 2L | 18127466..18127869 | 664..1067 | 100 | -> | Plus |
| 2L | 18127945..18128066 | 1068..1189 | 100 | -> | Plus |
| 2L | 18128131..18128246 | 1190..1305 | 100 | -> | Plus |
| 2L | 18128302..18128419 | 1306..1423 | 100 | -> | Plus |
| 2L | 18128474..18128942 | 1424..1892 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:09:40 Download gff for
BS21812.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18123605..18123908 | 17..320 | 100 | -> | Plus |
| arm_2L | 18126497..18126839 | 321..663 | 100 | -> | Plus |
| arm_2L | 18127466..18127869 | 664..1067 | 100 | -> | Plus |
| arm_2L | 18127945..18128066 | 1068..1189 | 100 | -> | Plus |
| arm_2L | 18128131..18128246 | 1190..1305 | 100 | -> | Plus |
| arm_2L | 18128302..18128419 | 1306..1423 | 100 | -> | Plus |
| arm_2L | 18128474..18128942 | 1424..1892 | 100 | | Plus |
BS21812.pep Sequence
Translation from 16 to 1893
> BS21812.pep
MSRKMLQVPVATLVLLSLLPIAHVAAASATAADATAATAASTTSTGIDAS
LKNAKLIEAKVLPDLAILQRVNQEDEKWQQVYRFIDDGFPVLELYGYKPL
PDLPYTLIVPKIDVRSIEKPRLKEFMLEHVVPGKIFDSYNGNGNSKEEEE
SFGNGNGHKIVFRKLEKSHNNVWLLNGQQILHKLRINENLMAIAIDGYLG
DRKSPYSKRNIQETNNRYNDPQPLEQPNITNAHAKVEPVIKESKASPLMS
FLANMKTGTKVFQHFLSKSNLTRIMDDNAYTVLIPSDNAFQRWHPIDWGF
YPFSVPEFTESVLRNHFLPMQRPLRLADVRNMDEVVVTTMGGEDVVFHGQ
PTPTVNNVSIMSDYNLSNGNQVFIISEVLFVTEAVVSKLHQMHKDKETPP
LLAFPWFGAQFLSHSFLALERDPRFTQITRYLNSAEIAPHISGANYTFFV
PEDRAFEKQGFDKLSDEVMASQRGVKMLLNHFVKGRLYNRDLRDNEVFET
IGGGHIKITRNPGSNYTSVNNAQITESEVFVYNLGTMYYLDDILYSHMLR
DFVSKSTKTRSNRHGSDSGGGSRSTSRPSDVEIVPNEFEGEHNGGDYAIH
GDDEDFEDEIITPKALPVQIYELPK*
BS21812.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:28:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5758-PF | 625 | CG5758-PF | 1..625 | 1..625 | 3257 | 100 | Plus |
| CG5758-PE | 625 | CG5758-PE | 1..625 | 1..625 | 3257 | 100 | Plus |
| CG5758-PD | 625 | CG5758-PD | 1..625 | 1..625 | 3257 | 100 | Plus |
| CG5758-PC | 625 | CG5758-PC | 1..625 | 1..625 | 3257 | 100 | Plus |
| CG5758-PB | 625 | CG5758-PB | 1..625 | 1..625 | 3257 | 100 | Plus |
