BS21832.complete Sequence
1170 bp assembled on 2011-02-01
GenBank Submission: KX806070
> BS21832.complete
GAAGTTATCAGTCGACATGGGTCATAAAATGGGTGGCTTCTTGGAAAAAC
CAGAAACTGAAAAGCAGGCTCAAGAGGGTCATGGGAATGGGCTGCGATAC
TGCGTAAGTTCTATGCAAGGTTGGCGATTGGAAATGGAGGATAGCCACTC
GGCTGCTTGCCGGCTGAAGGATCCCTTCGCAACGTGGTCATATTTTGCGG
TGTTCGATGGTCACGCTGGCAGTCAAATATCACTGCATTGCGCTGAACAT
CTAATGAGTACTATATTGGAATCCGAATCTTTTTCGAAGCACAAATACGA
GGCTGGCATACGAGAGGGCTTCCTGCAGTTGGATGAGGATATGAGGAAGC
TGTATCACGACCAGCAAGGCGGCTCGACGGCCATTTGTGTTTTTGTATCA
CCGGACAAAATATATCTGGTCAATTGTGGTGACTCGCGTGCAGTGATATC
GCGAAATGGAGCAGCTGTCATCAGTACAATTGATCACAAGCCGTTTTCTC
CCAAAGAACAAGAACGCATTCAAAATGCCGGAGGCAGTGTAATGATTAAA
AGGATAAATGGCACTCTGGCAGTTTCCCGGGCCTTCGGTGACTATGATTT
CAAGAATGATGGCTCAAAGTCTCCTGTCGATCAGATGGTGTCTCCGGAAC
CTGATATAATAGTTTGCAATCGGTCCGAACACGATGAATTCATAGTTGTA
GCCTGCGATGGCATTTGGGATGTGATGACTAGCAGCGAGGTTTGTGAATT
TATTAGGTCACGGCTTTTGGTGACCTATGACCTGCCGATGATTGTTAACA
GCGTATTGGATATTTGCCTGCATAAAGGCAGCAGGGACAATATGACACTG
CTCCTCCTACTTTTGCCTGGAGCACCAAAGGTCGATATGGATGCAGTTAA
GGCCGAAAGGAGTCTTGATCAAACTATTGTGCAAATAACCAAGGAAGTGA
TTGAGAAGCACGAAATACACGACTTTGAAACACTTATACGACTGATGAAA
AGAATGGCCATTAACATTCCAAATCTACCACCTGGCGGTGGTCTTTATGC
AAAATATTACATTATAGAGCAAGCTTTCCACGAGAAATTTCCAGATACTC
CGGCTGAAATATATGATTATTTTTCCATGTAGAAGCTTTCTAGACCATTC
GTTTGGCGCGCGAGAAAGCG
BS21832.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:50:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6036-RA | 1116 | CG6036-PA | 1..1116 | 17..1132 | 5580 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:50:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6036-RA | 1184 | CG6036-RA | 28..1145 | 17..1134 | 5590 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:50:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26344329..26345446 | 1134..17 | 5590 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 21:50:44 has no hits.
BS21832.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-01 15:39:40 Download gff for
BS21832.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6036-RA | 28..1150 | 17..1139 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:38:35 Download gff for
BS21832.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6036-RA | 28..1150 | 17..1139 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:43:53 Download gff for
BS21832.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6036-RA | 28..1150 | 17..1139 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:43:53 Download gff for
BS21832.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26344324..26345446 | 17..1139 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:38:35 Download gff for
BS21832.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22170046..22171168 | 17..1139 | 99 | | Minus |
BS21832.pep Sequence
Translation from 16 to 1131
> BS21832.pep
MGHKMGGFLEKPETEKQAQEGHGNGLRYCVSSMQGWRLEMEDSHSAACRL
KDPFATWSYFAVFDGHAGSQISLHCAEHLMSTILESESFSKHKYEAGIRE
GFLQLDEDMRKLYHDQQGGSTAICVFVSPDKIYLVNCGDSRAVISRNGAA
VISTIDHKPFSPKEQERIQNAGGSVMIKRINGTLAVSRAFGDYDFKNDGS
KSPVDQMVSPEPDIIVCNRSEHDEFIVVACDGIWDVMTSSEVCEFIRSRL
LVTYDLPMIVNSVLDICLHKGSRDNMTLLLLLLPGAPKVDMDAVKAERSL
DQTIVQITKEVIEKHEIHDFETLIRLMKRMAINIPNLPPGGGLYAKYYII
EQAFHEKFPDTPAEIYDYFSM*
BS21832.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:59:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6036-PA | 371 | CG6036-PA | 1..371 | 1..371 | 1954 | 100 | Plus |
| alph-PB | 371 | CG1906-PB | 1..368 | 5..368 | 1050 | 53.4 | Plus |
| alph-PC | 368 | CG1906-PC | 1..364 | 5..364 | 1036 | 53.4 | Plus |
| alph-PD | 368 | CG1906-PD | 1..364 | 5..364 | 1036 | 53.4 | Plus |
| alph-PA | 368 | CG1906-PA | 1..364 | 5..364 | 1036 | 53.4 | Plus |
