BS21844.complete Sequence
1274 bp assembled on 2011-02-02
GenBank Submission: KX801719
> BS21844.complete
GAAGTTATCAGTCGACATGCCGTACAACATGGACGTACTGATACCGGAAA
AGGACGAGCTCTCCGACTTGAAGCTAAAAGATGCGCACAGTTCCCTGGAC
GAACTGGACATGGAGGATCTCTACGTGCGTTACAAGAAACTGCAAAAGAC
ACTGGAGTTCATTGAAGTGCAGGAGGAGTACATCAAGGACGAGCAGCGAA
ACCTGAAAAAGGAGTATCTGCACGCCCAGGAGGAGGTGAAGCGCATCCAG
TCGGTGCCGCTGGTGATTGGCCAGTTCCTGGAGGCCGTCGATCAGAACAC
GGGCATTGTGGGCTCCACCACCGGCTCCAATTACTATGTGCGCATCCTGT
CCACCATCGATCGCGAGCTGCTGAAGCCCTCCGCCTCGGTGGCCCTGCAC
AAGCACAGCAACGCGCTGGTGGACGTGCTGCCACCAGAGGCGGATAGCTC
CATTTCGATGCTGCAGCCGGATGAGAAGCCCGACGTTAGCTATGCGGACA
TTGGTGGCATGGACATGCAGAAGCAGGAGATCCGCGAGGCAGTCGAACTG
CCGCTGACCCACTTCGAGCTGTACAAGCAGATTGGCATCGATCCGCCGCG
CGGCGTGCTTATGTACGGTCCGCCCGGTTGCGGCAAGACCATGTTGGCCA
AGGCGGTGGCCCATCATACGACGGCGTCGTTCATACGCGTCGTCGGCTCG
GAGTTCGTGCAGAAGTACCTCGGCGAGGGACCGCGCATGGTGCGCGACGT
TTTCAGGCTGGCCAAGGAGAACGCGCCGGCCATCATCTTCATTGACGAGA
TCGATGCGATTGCCACGAAGCGTTTCGATGCGCAGACTGGCGCCGATCGC
GAGGTGCAGCGCATTCTGCTCGAGCTGCTCAACCAGATGGACGGGTTCGA
TCAGACCACGAACGTTAAGGTGATCATGGCTACCAACAGGGCGGACACAC
TCGATCCGGCATTGCTGCGACCTGGTCGATTGGATCGTAAGATTGAGTTC
CCGCTGCCCGATCGCCGGCAGAAGCGACTCGTCTTCTCCACCATCACCTC
GAAGATGAACCTAAGCGAGGATGTCGATTTGGAGGAGTTTGTGGCGCGGC
CGGACAAGATCTCCGGTGCCGATATCAACGCCATTTGCCAAGAGGCGGGC
ATGCACGCGGTGCGTGAGAATCGCTACATCGTTTTGGCCAAGGACTTCGA
GAAGGGCTACAAGAACAATATCAAGAAGGACGAGCAGGAGCACGAGTTCT
ACAAATAGAAGCTTTCTAGACCAT
BS21844.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:48:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpt3-RB | 1242 | CG16916-PB | 1..1242 | 17..1258 | 6210 | 100 | Plus |
| Rpt3-RA | 1242 | CG16916-PA | 1..1242 | 17..1258 | 6210 | 100 | Plus |
| Rpt3R-RD | 1218 | CG9475-PD | 112..1174 | 152..1214 | 2090 | 79.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:48:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpt3-RB | 1553 | CG16916-RB | 213..1455 | 17..1259 | 6215 | 100 | Plus |
| Rpt3-RA | 1423 | CG16916-RA | 83..1325 | 17..1259 | 6215 | 100 | Plus |
| Rpt3R-RD | 1414 | CG9475-RD | 145..1207 | 152..1214 | 2090 | 79.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:48:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11125563..11126687 | 135..1259 | 5625 | 100 | Plus |
| 3R | 32079331 | 3R | 9754942..9755572 | 1214..584 | 1280 | 80.2 | Minus |
| 3R | 32079331 | 3R | 9755619..9756052 | 585..152 | 820 | 79.3 | Minus |
| X | 23542271 | X | 11125421..11125506 | 51..136 | 430 | 100 | Plus |
| 3R | 32079331 | 3R | 23753922..23754165 | 759..1002 | 290 | 74.6 | Plus |
| X | 23542271 | X | 21317013..21317337 | 680..1004 | 245 | 71.7 | Plus |
| X | 23542271 | X | 11125313..11125349 | 17..53 | 185 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:48:17 has no hits.
BS21844.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-14 14:31:58 Download gff for
BS21844.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpt3-RA | 126..1361 | 17..1252 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:34:37 Download gff for
BS21844.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpt3-RA | 83..1318 | 17..1252 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:10:07 Download gff for
BS21844.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpt3-RA | 83..1318 | 17..1252 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:10:07 Download gff for
BS21844.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11125313..11125348 | 17..52 | 100 | -> | Plus |
| X | 11125423..11125506 | 53..136 | 100 | -> | Plus |
| X | 11125565..11126680 | 137..1252 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:34:37 Download gff for
BS21844.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11019346..11019381 | 17..52 | 100 | -> | Plus |
| arm_X | 11019456..11019539 | 53..136 | 100 | -> | Plus |
| arm_X | 11019598..11020713 | 137..1252 | 100 | | Plus |
BS21844.pep Sequence
Translation from 16 to 1257
> BS21844.pep
MPYNMDVLIPEKDELSDLKLKDAHSSLDELDMEDLYVRYKKLQKTLEFIE
VQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFLEAVDQNTGIVGS
TTGSNYYVRILSTIDRELLKPSASVALHKHSNALVDVLPPEADSSISMLQ
PDEKPDVSYADIGGMDMQKQEIREAVELPLTHFELYKQIGIDPPRGVLMY
GPPGCGKTMLAKAVAHHTTASFIRVVGSEFVQKYLGEGPRMVRDVFRLAK
ENAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNV
KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLS
EDVDLEEFVARPDKISGADINAICQEAGMHAVRENRYIVLAKDFEKGYKN
NIKKDEQEHEFYK*
BS21844.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:05:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpt3-PB | 413 | CG16916-PB | 1..413 | 1..413 | 2104 | 100 | Plus |
| Rpt3-PA | 413 | CG16916-PA | 1..413 | 1..413 | 2104 | 100 | Plus |
| Rpt3R-PD | 405 | CG9475-PD | 20..404 | 28..412 | 1731 | 85.2 | Plus |
| Rpt3R-PC | 405 | CG9475-PC | 20..404 | 28..412 | 1731 | 85.2 | Plus |
| Rpt2-PB | 439 | CG5289-PB | 63..431 | 41..407 | 1013 | 50.4 | Plus |
