BS21857.complete Sequence
1913 bp assembled on 2011-02-21
GenBank Submission: KX805866
> BS21857.complete
GAAGTTATCAGTCGACATGTCTACCCTGGCCAATGGTGGAAAGGAGGAGG
ATCTAAAAATTCTGGCTCAGCTGAAGAGCATCGAACAGATCAACGAGCAG
CGCCGCATATTTCTCAACAGCACGATCAATGAGGAGGTGCCGGAGGCCAC
AAACGGATCGACGGTTCGGGAGGAGGACCTGGAGAAGAATCTGAAGGCCA
TAGACGAGCCGCAGTCTACGAAGATGCCCCCGGAGGAGGTGGCGAAGAAA
ACGCCTGATGAGGTCCCAGCCCAGGAGCAGCAGAAGGAACCCGAAAAGGT
GGAGCCAGCCAAACCAGTGCCCCCCAACACGCTCACCCTGAACGTGAAAT
ACGCCACGCTGCCAAGTCCGAATGTGGTGACCCTGCGATCCCCACTTTCG
CCGCCCCCTAAGCCGCCAATGCTGGGCCGCACCCGCAGTACAGGTCCCGC
CGATGGCAAGGGTCCAGCGAGCAATGGAGCTCTCTCGCCGGACAGCTCCA
TAATCCGTCAGAGCTTTCCCGAAGGCGTCATCACGCCCAGCAAGCCGGAA
AAGAGCCCTGCCACGCCCAGCGAGGAAGGCCCGCCGACCGTCTCCGCCCG
CCACTACGAGGGACTGATCGAGGAGCTGAGGTGTCCCGGCTGTGCCGGCG
CCATGAAGGCGCCCATCCTTCTGTGCAAGAGTGGCCACAGTGTCTGTGAA
CAGTGCACCCGCATTTTGCTCATGTGCCCGCTCTGCAAGGAACCCTTCAC
CAACTCCCGATCGCTGACCGTGGAGGCGCTGTGCGCCAAGGCGCACTTCC
GGTGCGGACACGCCTCCGGCGGCTGCCAGGTGCGGATGCCGGTCGTCCTG
CTGCCGTGGCACGAACAGCAGTGCATGTACAAGCCGATGAAGTGCTTCAT
GGGCCGAGTGTGGGGCGATTGCCGCTGGCAGGGGCGCGAGGTGCAGTGGA
AAGAGCATCTGGAGGAGCAGCACGACGACCGCCTGTTTCGGTCAAGCAGC
GCTGATCTGGAATGGAATCTAGGCACGCGGCGGAAACCGTTAACCGGCTA
CTATGTCTTCCAGGCGCACGACGAAATGTTCAACTTCTACGAGATCCACG
ACCGCCAGCGTGTGCTGTTCACCATGACCTGCACGTCGAACCGGCGGGAC
AGCAAGTACAACTTCGCCTACGAGGTGACGGTGCTGCTGCCAGACAACGA
GGCGCTGTCCATGACCCAGAAGTTTCCCGTGCACAGCGAGTACGACAAGG
ACATCCTCATGGAGGGCACATGTGTCAGCATTCCGCTGACGGAGCTTAAC
CGCTTTCTGGACCAGGACAAGGTTCTTCATTACCGCGTGAGTGTGCTGGC
GGTCAAGTCGCCGCGTCGCGCAAAACCACCTCGCCAAAATCTGCCGCAGC
CGGCGGACCTGGAACAGGCCCCGAATGGAGGCGTCAACGTGAAGAGCGTG
CCGACCAACATGATCATTACGCGCACCTACAAGGAGGCCATCGGCGAGGT
GACCAAAGCGGATGTGGCCAGTCCGGACTCGGAGGAGGATCCGGCTGCAG
CCGACGGCGCTGGGGCCATTGGAGCCGACGGAGCCGGCGGTGTGGAGCTC
GAGCGCAAGTGGGGCACACCGCAGCTGCACTTCAATCGGAAATATCTGCG
GAACACTCTGAACGATGCCACGCCCGCGGAGGATGAGCTGCGTCCGCTGG
CCGCCGATCTGCGCAATGGAAATGGCGACGATAAGCTCTCCCAGTGCAGC
AACAGCACGAGTTACACGAAAAAGGTGTCGGATTCGCTGCGAAGAAGCTT
CCGGGCACTCAAGGCGGATATCGTGGAGCTGCGCCCGTTCAGCAAGAAGG
CAGTCAGGGATGGATCGACCTCTCCGGTCCAAAGCAATGGCAAGTAGAAG
CTTTCTAGACCAT
BS21857.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:27:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2681-RA | 1881 | CG2681-PA | 1..1881 | 17..1897 | 9405 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:27:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2681-RA | 2283 | CG2681-RA | 281..2161 | 17..1897 | 9405 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:27:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2708964..2709687 | 17..740 | 3620 | 100 | Plus |
| X | 23542271 | X | 2710318..2710903 | 738..1323 | 2930 | 100 | Plus |
| X | 23542271 | X | 2710969..2711546 | 1320..1897 | 2890 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:27:43 has no hits.
BS21857.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-09 09:38:06 Download gff for
BS21857.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2681-RA | 281..2161 | 17..1897 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:34:52 Download gff for
BS21857.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2681-RA | 281..2161 | 17..1897 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:53:10 Download gff for
BS21857.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2681-RA | 281..2161 | 17..1897 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:53:10 Download gff for
BS21857.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2708964..2709686 | 17..739 | 100 | -> | Plus |
| X | 2710320..2710901 | 740..1321 | 100 | -> | Plus |
| X | 2710971..2711546 | 1322..1897 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:34:52 Download gff for
BS21857.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2602997..2603719 | 17..739 | 100 | -> | Plus |
| arm_X | 2604353..2604934 | 740..1321 | 100 | -> | Plus |
| arm_X | 2605004..2605579 | 1322..1897 | 100 | | Plus |
BS21857.pep Sequence
Translation from 16 to 1896
> BS21857.pep
MSTLANGGKEEDLKILAQLKSIEQINEQRRIFLNSTINEEVPEATNGSTV
REEDLEKNLKAIDEPQSTKMPPEEVAKKTPDEVPAQEQQKEPEKVEPAKP
VPPNTLTLNVKYATLPSPNVVTLRSPLSPPPKPPMLGRTRSTGPADGKGP
ASNGALSPDSSIIRQSFPEGVITPSKPEKSPATPSEEGPPTVSARHYEGL
IEELRCPGCAGAMKAPILLCKSGHSVCEQCTRILLMCPLCKEPFTNSRSL
TVEALCAKAHFRCGHASGGCQVRMPVVLLPWHEQQCMYKPMKCFMGRVWG
DCRWQGREVQWKEHLEEQHDDRLFRSSSADLEWNLGTRRKPLTGYYVFQA
HDEMFNFYEIHDRQRVLFTMTCTSNRRDSKYNFAYEVTVLLPDNEALSMT
QKFPVHSEYDKDILMEGTCVSIPLTELNRFLDQDKVLHYRVSVLAVKSPR
RAKPPRQNLPQPADLEQAPNGGVNVKSVPTNMIITRTYKEAIGEVTKADV
ASPDSEEDPAAADGAGAIGADGAGGVELERKWGTPQLHFNRKYLRNTLND
ATPAEDELRPLAADLRNGNGDDKLSQCSNSTSYTKKVSDSLRRSFRALKA
DIVELRPFSKKAVRDGSTSPVQSNGK*
BS21857.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:31:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2681-PA | 626 | CG2681-PA | 1..626 | 1..626 | 3310 | 100 | Plus |
| sinah-PC | 351 | CG13030-PC | 53..238 | 162..332 | 220 | 30.3 | Plus |
| sina-PC | 314 | CG9949-PC | 1..184 | 123..319 | 199 | 28.4 | Plus |
| sina-PB | 314 | CG9949-PB | 1..184 | 123..319 | 199 | 28.4 | Plus |
| sina-PA | 314 | CG9949-PA | 1..184 | 123..319 | 199 | 28.4 | Plus |
