BS21858.complete Sequence
2387 bp assembled on 2011-02-18
GenBank Submission: KX800436
> BS21858.complete
GAAGTTATCAGTCGACATGTCATTGGAGGATCTCAAGATCAAGCTGCGCC
GTCATCCGAAGTTATTGGGCCTTGGAGGAGTTGGCCTTATTACTGCTGCT
GGTTTCTTGCTGTACGAGTCGCCCCAGGTCCGCCGGTTCCTTTCCCAATA
TGTGGACAAGAAATCGCCGGAGCCGGACAAACGGCGTGCCGAGTACATCT
ACATCAAATACCACATCTACCGCGAGTCCATGCGAAAGTTGAAGCAGAAA
GAGGAGGACGAGAAGAAGTGGATCAGCGTGATCATCAACCCGATTGGGAA
ATGGTGGAAGGCGGCTAAGCACTCGGTGGCCTGGCGTCTGCTCAATATCG
CCCAAACTGGCAGCCAGCCGGAACGCCTCAAGGCGGTCCAGCAGCTCATC
TGCATGGATCACTTGAAGGACTGGGATTTCCGTCATCTGGCCCAAATCTG
CGATGCCCGCACGGCTGTCTCCTTGGCCCGTTGCAATGCCGACACGCGAT
GGTTTATGCCCGTTCCCCGACGTGGGTGCATTAAGAATCCCAAGATGCTC
CTCTCGGAACTTCACGTGATGCTGGCCCGGCTGCGACCCATGGCCTGCAT
TGACCACTTCTTCAGCAAATACTTTCCCGAACAGGATCCCATTGAGGACA
TTCACGAATACTTGACCCAGGAGCAGACAATAGTCCTTTCCACAGCCGAC
ACGGACTTACTAAAAGAAATCATTTCATTCCTGCACCATATTACAAAGGA
TCCCGAGGTCTCCGCCAGGCTTATGAGGGACGGAGGCCTCGTGCATCTCA
TGGAGCTACGAAAAATATTCAACGACGACAACGAGACCTTATCGACTTTG
TGCAAAGTGTTGGCCAATATGTCCCTGGTGCCCGATGCCGTGGAACATTT
CTTTACGTCCGGATGGGTGGGCGCCCTGGCCGAGTGGCAACAATGCCCAG
ATCTCCGCCTGCAGGTGATCTCGGCTAAAACTATGGCCAATCTGGATCAC
GACGATCCGAACCAGTGCACGTATCCGCCAAATGTCTATCCCCTGCATCC
ACGAGTTCGCACCCGCAGGAAGCCAAAGGCAGACATTGTTTTCGTCCATG
GATTGCTGGGAGGTGTTTTTATCACCTGGCGTCAGCGAGATAGAAAGCCC
ACTGAGCTGGGTCTCTACGGAAAAAACGCCTTCTATACCAGCGAAACAGA
CGACGTATTTCTGGTGGGTGAGCAGAAGAGACTCAGTGGAGGCAAACTAA
AACCCGGCGAGGCGGTCAAAAATGTCAATGGCAACCAAAAGACAGAAACA
ATCAAAGATCCTGTCTTGAAAGCTAGCAAAAAAGTGGAGGAACAGCGTCT
GAACATTAGCGATGCTGCCACCAAGGAGTTCGTGGAGACACTGAGAAACG
AAGCCGAGTTGGACTCGGATTGGGAAGTGGTCCATCCCGATGTTCCTCTT
AATGCCAACGAGGAGTGCGAAGGAAAATTTAGTGTGTGCGGAAGCGAATG
GCGGAACCAGGACACAAGTGAGGAGTACACCAACTGCTGGCCCATGGAGT
GGCTGCCAGATGATTATCCAGATTCCAGAATTCTGGGCATAGATTACACA
TCAGCAGTCACAGAGTGGTCTGCCAATTTTACCAAATACTGTCCGTGTGA
AAAGGGTCAGGGTCACATTGATGTGAGAGCCAACACACTGCTCGACAGGA
TTTCAGCGTCGGATGTGGGCAACGATCGTCCGATCGTGTGGATAGGACAT
TCCATGGGCGGCCTGCTGACCAAGCTAATACTGCTAAAATCCCTGGACTC
CCAAGAGCCGAAGGTCCAACAGCTGACCAAGAACACTAAAGGCATTGTAT
TTTTGGGAACCCCACACCGGGGCTCACCAATTGCCAAGTGGAAGCAGCAC
ATGCAGATGATCCTGTCTCCATCAATCGAGGTCAAAGAGATGGAAGAGAA
CTCGCCGAAGCTGCTGGAGATGCACCGCCGCTTTATGGGGTGCTTGCACA
CGCTACTGCGCCATGTAAAGGTGGTCAGTGTAGCTGAAGGATCCCCTACC
ATGTTGACCTCGTTCAAGTTCCCCCTGCGCATTGTCACCGAAGAGTCCTC
TAAGATAGATTTCGGGGACTTCTATCTGCTGAAGGATGATCACTTGAGTC
TCTCCAAGCCCATTTACAGGCAATCGTTTCTGTATCAGAGATTATTGCAC
GTGATCCGCGAGGCCATTAAGGAACGATCAGATCCCAAAGATCAGGATGG
CCAGTCACAAAGCACTTCGAATCAAGATGTAGTGCTTGTCAAGATCGTAG
CTGCTCTGTTGGAGGGAGCCAAGGGTCTGTTCGAATCGCTGCCCAGAGTC
GCCCTCAGATTTAGCACTTAGAAGCTTTCTAGACCAT
BS21858.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:25:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10383-RB | 2355 | CG10383-PB | 1..2355 | 17..2371 | 11775 | 100 | Plus |
| CG10383-RA | 2355 | CG10383-PA | 1..2355 | 17..2371 | 11775 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:25:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10383-RB | 3046 | CG10383-RB | 479..2833 | 17..2371 | 11775 | 100 | Plus |
| CG10383-RA | 2870 | CG10383-RA | 303..2657 | 17..2371 | 11775 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:25:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18691117..18692182 | 2371..1306 | 5330 | 100 | Minus |
| 2L | 23513712 | 2L | 18692245..18692908 | 1307..644 | 3320 | 100 | Minus |
| 2L | 23513712 | 2L | 18692968..18693515 | 644..97 | 2740 | 100 | Minus |
| 2L | 23513712 | 2L | 18695045..18695124 | 96..17 | 400 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:25:48 has no hits.
BS21858.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-18 10:40:44 Download gff for
BS21858.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10383-RA | 299..2653 | 17..2371 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:52:46 Download gff for
BS21858.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10383-RA | 303..2657 | 17..2371 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:12:56 Download gff for
BS21858.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10383-RA | 303..2657 | 17..2371 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:12:56 Download gff for
BS21858.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18691117..18692180 | 1308..2371 | 100 | <- | Minus |
| 2L | 18692245..18692908 | 644..1307 | 100 | <- | Minus |
| 2L | 18692969..18693515 | 97..643 | 100 | <- | Minus |
| 2L | 18695045..18695124 | 17..96 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:52:46 Download gff for
BS21858.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18691117..18692180 | 1308..2371 | 100 | <- | Minus |
| arm_2L | 18692245..18692908 | 644..1307 | 100 | <- | Minus |
| arm_2L | 18692969..18693515 | 97..643 | 100 | <- | Minus |
| arm_2L | 18695045..18695124 | 17..96 | 100 | | Minus |
BS21858.pep Sequence
Translation from 16 to 2370
> BS21858.pep
MSLEDLKIKLRRHPKLLGLGGVGLITAAGFLLYESPQVRRFLSQYVDKKS
PEPDKRRAEYIYIKYHIYRESMRKLKQKEEDEKKWISVIINPIGKWWKAA
KHSVAWRLLNIAQTGSQPERLKAVQQLICMDHLKDWDFRHLAQICDARTA
VSLARCNADTRWFMPVPRRGCIKNPKMLLSELHVMLARLRPMACIDHFFS
KYFPEQDPIEDIHEYLTQEQTIVLSTADTDLLKEIISFLHHITKDPEVSA
RLMRDGGLVHLMELRKIFNDDNETLSTLCKVLANMSLVPDAVEHFFTSGW
VGALAEWQQCPDLRLQVISAKTMANLDHDDPNQCTYPPNVYPLHPRVRTR
RKPKADIVFVHGLLGGVFITWRQRDRKPTELGLYGKNAFYTSETDDVFLV
GEQKRLSGGKLKPGEAVKNVNGNQKTETIKDPVLKASKKVEEQRLNISDA
ATKEFVETLRNEAELDSDWEVVHPDVPLNANEECEGKFSVCGSEWRNQDT
SEEYTNCWPMEWLPDDYPDSRILGIDYTSAVTEWSANFTKYCPCEKGQGH
IDVRANTLLDRISASDVGNDRPIVWIGHSMGGLLTKLILLKSLDSQEPKV
QQLTKNTKGIVFLGTPHRGSPIAKWKQHMQMILSPSIEVKEMEENSPKLL
EMHRRFMGCLHTLLRHVKVVSVAEGSPTMLTSFKFPLRIVTEESSKIDFG
DFYLLKDDHLSLSKPIYRQSFLYQRLLHVIREAIKERSDPKDQDGQSQST
SNQDVVLVKIVAALLEGAKGLFESLPRVALRFST*
BS21858.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:05:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10383-PB | 784 | CG10383-PB | 1..784 | 1..784 | 4136 | 100 | Plus |
| CG10383-PA | 784 | CG10383-PA | 1..784 | 1..784 | 4136 | 100 | Plus |
| CG5455-PB | 688 | CG5455-PB | 467..686 | 504..732 | 324 | 32.3 | Plus |
| CG5455-PA | 688 | CG5455-PA | 467..686 | 504..732 | 324 | 32.3 | Plus |
