BS21872.complete Sequence
1664 bp assembled on 2011-02-02
GenBank Submission: KX804202
> BS21872.complete
GAAGTTATCAGTCGACATGTCTGCCAGCCACAAACAGCGTTATAAAAATG
CCGCCTTGGACTCCACAGAGATGCGTCGTCGTCGCGAGGAGGTGGGCATC
CAGTTGCGAAAAAACAAACGCGAACAGCAGCTCTTTAAGCGACGCAATGT
GGTTCTTGAGCCGGCTACATCCTCAACATCAGCCGGAGTGGAGAGCAACA
CCGATAACGAACAGCAGGCTGCCGACATGCACATGGCTGACAGCAGCACT
GGCGGTCAAAACGAGGAAGCTGCTGGAAGCGGGGCACAGCCATCCGTAAT
CAACGAGGAAATGATTCAAATGCTCTTCAGTGGACGTGAAAACGAACAGC
TTGAGGCGACTCAAAAGTTCCGCAAACTGCTGTCCCGCGATCCCAATCCT
CCCATTGAGGAAGTCATCCAGAAGGGGATAGTGCCACAGTTTGTCACCTT
TTTGCGAAATAGCGCAAATGCCACGCTGCAGTTCGAGGCCGCCTGGACGC
TAACGAACATCGCATCGGGCACCTCGCAACAGACCAAGGTGGTTATCGAG
GCCGGGGCAGTGCCTATCTTCATTGATTTGCTCTCCAGTCCCCATGATGA
TGTTCAGGAACAGGCCGTGTGGGCCCTAGGCAACATAGCCGGTGACTCAC
CCATGTGTCGAGACCATTTGCTCGGCTCCGGCATTCTAGAGCCTCTCCTG
CATGTATTGAGCAACTCGGATCGCATTACCATGATACGGAATGCGGTGTG
GACACTTTCAAACTTGTGCCGCGGCAAAAGCCCTCCCGCAGACTTTGCCA
AAATTAGCCATGGTCTACCAATACTGGCACGGTTGCTGAAGTACACTGAT
GCGGATGTACTAAGCGATACTTGCTGGGCCATAGGCTACCTGTCAGATGG
TCCCAATGATAAAATCCAGGCTGTAATTGATGCGGGTGTTTGCCGTCGCC
TGGTTGAGCTGCTATTACATCCTCAGCAGAACGTGAGCACAGCTGCTCTG
AGGGCCGTGGGCAATATTGTGACAGGCGACGATCAGCAGACCCAGGTGAT
ATTGGGGTACAACGCTTTGACCTGCATTAGCCACCTGCTGCATTCGACGG
CGGAAACAATCAAGAAGGAGTCGTGCTGGACAATCTCAAATATTGCAGCC
GGCAATCGTGAGCAGATCCAGGCCTTAATCAATGCCAACATATTCCCGCA
GCTGATGGTTATCATGCAGACGGCCGAATTTAAGACTCGCAAGGAGGCCG
CATGGGCCATTACCAACGCAACCAGCAGCGGTACGCACGAACAGATCCAC
TACCTGGTGCAGGTTGGCTGTGTGCCGCCCATGTGCGATTTTCTCACCGT
CGTCGACTCGGACATCGTCCAAGTGGCGCTAAATGCACTTGAAAACATTT
TGAAGGCAGGTGAAAAGTTCCAGACGCGACCAAATCCCTATGCTATTACC
ATCGAGGAATGCGGAGGTTTGGACAAAATAGAGTATCTGCAGGCGCATGA
AAACCGCGACATCTACCACAAATCATTTTACATTATCGAACAGTACTTCG
GCAACGAAGAGGAGGATAGCCGGGTGGCTCCCGTGGCAGGCACGCAACAG
TTTGAGTTCGATCCGGACAACATGCCCAGCACCGGATTTAACTTTTAGAA
GCTTTCTAGACCAT
BS21872.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:49:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Kap-alpha1-RA | 1632 | CG8548-PA | 1..1632 | 17..1648 | 8160 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:49:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Kap-alpha1-RA | 2322 | CG8548-RA | 109..1744 | 13..1648 | 8165 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:49:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19809075..19809576 | 967..1468 | 2510 | 100 | Plus |
| 3L | 28110227 | 3L | 19808196..19808684 | 214..702 | 2445 | 100 | Plus |
| 3L | 28110227 | 3L | 19808744..19809007 | 703..966 | 1320 | 100 | Plus |
| 3L | 28110227 | 3L | 19807933..19808138 | 13..218 | 1015 | 99.5 | Plus |
| 3L | 28110227 | 3L | 19809637..19809820 | 1465..1648 | 920 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:49:35 has no hits.
BS21872.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-14 14:32:01 Download gff for
BS21872.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Kap-alpha1-RA | 98..1729 | 17..1648 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:35:23 Download gff for
BS21872.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Kap-alpha1-RA | 113..1744 | 17..1648 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:10:49 Download gff for
BS21872.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Kap-alpha1-RA | 113..1744 | 17..1648 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:10:49 Download gff for
BS21872.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19807937..19808137 | 17..217 | 100 | -> | Plus |
| 3L | 19808200..19808684 | 218..702 | 100 | -> | Plus |
| 3L | 19808744..19809007 | 703..966 | 100 | -> | Plus |
| 3L | 19809075..19809574 | 967..1466 | 100 | -> | Plus |
| 3L | 19809639..19809820 | 1467..1648 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:35:23 Download gff for
BS21872.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19801037..19801237 | 17..217 | 100 | -> | Plus |
| arm_3L | 19801300..19801784 | 218..702 | 100 | -> | Plus |
| arm_3L | 19801844..19802107 | 703..966 | 100 | -> | Plus |
| arm_3L | 19802175..19802674 | 967..1466 | 100 | -> | Plus |
| arm_3L | 19802739..19802920 | 1467..1648 | 100 | | Plus |
BS21872.pep Sequence
Translation from 16 to 1647
> BS21872.pep
MSASHKQRYKNAALDSTEMRRRREEVGIQLRKNKREQQLFKRRNVVLEPA
TSSTSAGVESNTDNEQQAADMHMADSSTGGQNEEAAGSGAQPSVINEEMI
QMLFSGRENEQLEATQKFRKLLSRDPNPPIEEVIQKGIVPQFVTFLRNSA
NATLQFEAAWTLTNIASGTSQQTKVVIEAGAVPIFIDLLSSPHDDVQEQA
VWALGNIAGDSPMCRDHLLGSGILEPLLHVLSNSDRITMIRNAVWTLSNL
CRGKSPPADFAKISHGLPILARLLKYTDADVLSDTCWAIGYLSDGPNDKI
QAVIDAGVCRRLVELLLHPQQNVSTAALRAVGNIVTGDDQQTQVILGYNA
LTCISHLLHSTAETIKKESCWTISNIAAGNREQIQALINANIFPQLMVIM
QTAEFKTRKEAAWAITNATSSGTHEQIHYLVQVGCVPPMCDFLTVVDSDI
VQVALNALENILKAGEKFQTRPNPYAITIEECGGLDKIEYLQAHENRDIY
HKSFYIIEQYFGNEEEDSRVAPVAGTQQFEFDPDNMPSTGFNF*
BS21872.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:05:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Kap-alpha1-PA | 543 | CG8548-PA | 1..543 | 1..543 | 2794 | 100 | Plus |
| Kap-alpha3-PD | 514 | CG9423-PD | 4..514 | 1..543 | 1185 | 45.9 | Plus |
| Kap-alpha3-PC | 514 | CG9423-PC | 4..514 | 1..543 | 1185 | 45.9 | Plus |
| Kap-alpha3-PB | 514 | CG9423-PB | 4..514 | 1..543 | 1185 | 45.9 | Plus |
| Kap-alpha3-PA | 514 | CG9423-PA | 4..514 | 1..543 | 1185 | 45.9 | Plus |
