BS21880.complete Sequence
1802 bp assembled on 2011-02-18
GenBank Submission: KX805733
> BS21880.complete
GAAGTTATCAGTCGACATGAATTCTTCCAGCGTGACGCCGCGTTCAGTTC
GTAGTAACAAAGCATTCTTGCTGAGGACAGCTGGAAAGGCGGAAAAGCAA
GCCTCAGACAAAGCTACATGGTCTCGCACTTCTTCTTGTGGTGGCGTCTT
CTCTACTCCTCCCACCCAGAATGGCGACGGAAGCCCAAACAAAGGTAGGC
TCAGTCACATTCCAAATAGGCGTGGAGCGAGTCGGTCGTCTATCCATTCG
CGAAAAACTTCTCTGGAACGGGTTACTTCTTCGACGAAAGCGCGCCCGTG
TGTCAGTACGTATTCGTTGCCCAATCGACGGGTCGAGCCCGAGCATAAAG
TAGTTGAGCCCGATCGGAAAACTGATATCGATGAGTTGAATCCCCCCAAG
CGGAACGTGGTTCCCATAAAGACGCATGCCCAGTCAGCACAATTGGTTAA
GTCAACGACATGCGAACCTTATCAAAATGTAAAGAAGCCTGAAAAGATGT
CGCATCGCCGTGTCCTGGAGATGAACCGGATGCGGGTCTTTGATACGCAG
AAAAAAAAACTGGAGAACCTGCAGTCCGAGTTTATGCACAAGATCCGGTT
AATGGGTTCGGAGCTCCGGAATCAAGGGGTCTTCAAGTTTGTGGGTCTGA
CTGTAAACGATGAATGCAAGCTTGTGGTCCACCATGATGATCTACTTCGA
TTGCCCAAGAGTATTCCCGCCGAAAGTATGAATGACTTGAAAACCAGGTG
TCGTGCGATTGTAGATCAGGGGGTTTTGTTAATCTACGACCATATACCAA
GAATTCAGAGGGCTAAAAATGATCTCGAGGCTAGTGAAAAGCGTGAGGAA
ACTCAAAAAAAGTTGTCTAACCTAGTGGAAGAAAAAATGAATTTAATCGT
CGAGGAGATCGAACAGTTGTGCGGTGCATGCTCCAAACAAGAGTCACCCA
ACAAAAGTCTCTATCGCGAGATGTCCGAGTTGCGTTCCCAGAAACAGGCC
ATGGAGGTTCGTTATTTTGACGCCCAGAAGGAGCACACTGAACAGATGAA
CCAGTTGCGGATCGAGCTCGATGCCAAGCTGAAACAGGAGCTGGCCAGTC
GAGATCAGATCATTGTAGAGCTGAGAAAGAGCCTGCGGCGAAGCGAGGAT
ATGCTCAGTGAGCAGTCCATTCGATTGGCCGAGAACAATTCCAAGCTATT
GACCGAGGATTCCACCATCGAGGTACTGCGCTCCGAGGTAGCCAAGCTCA
AGACTGTAAAAGAGCAAATGGTTAAGCGTCTGGAAGAGGCGGACAAAGGT
CTGGAGCGGGCTCGAAATTCCGTCGATAAGAACTTGAAACACATCGATTA
CCTGGAGGGCGAACTGAAGGAGGCCCGTGAGCTCATTGTCCATCTGGAAC
AGCGTCCAGATGCCATGGACGCGGGAGTTAAAGAAAAGGATTTGATCATT
GCCGATTTGAAACTGCAGCTGCAAAGTCTCGAGCAGCATAAGAAGGTCAT
GAACAAACAGGTGGCCAATACAATAAAGCAGCATGCCGACTTTGAAGAGC
TGGGTGGAAACTATAAGGAAGCTCTACAGCAGATAAGCGATCTAAGGGAG
ACCCTAAGTGTTACCAATGCCAAATTGGAGATGCAATCCAAGCTCGAAGT
GCAGCTGCGCAAGGAAGTGTCCAAGATGCGCGAGCAAATGGTTATCGATC
AGAAGTTGCTGAACGCTCGCAGCGAATTGATCGCAACACTGCAGAAGAAT
GAGGAGGATAGCCGCACCAAACTAGACCAAATGTAAAAGCTTTCTAGACC
AT
BS21880.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:27:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SIP2-RG | 1770 | CG13164-PG | 1..1770 | 17..1786 | 8850 | 100 | Plus |
| SIP2-RE | 1770 | CG13164-PE | 1..1770 | 17..1786 | 8850 | 100 | Plus |
| SIP2-RA | 2499 | CG13164-PA | 1..1769 | 17..1785 | 8845 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:27:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SIP2-RG | 3025 | CG13164-RG | 172..1942 | 17..1787 | 8855 | 100 | Plus |
| SIP2-RE | 2910 | CG13164-RE | 172..1942 | 17..1787 | 8855 | 100 | Plus |
| SIP2-RA | 2973 | CG13164-RA | 172..1940 | 17..1785 | 8845 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:27:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12304522..12304902 | 1257..877 | 1905 | 100 | Minus |
| 2R | 25286936 | 2R | 12305529..12305872 | 464..121 | 1720 | 100 | Minus |
| 2R | 25286936 | 2R | 12304128..12304457 | 1587..1258 | 1650 | 100 | Minus |
| 2R | 25286936 | 2R | 12305220..12305472 | 716..464 | 1265 | 100 | Minus |
| 2R | 25286936 | 2R | 12303860..12304059 | 1785..1586 | 1000 | 100 | Minus |
| 2R | 25286936 | 2R | 12304964..12305125 | 878..717 | 810 | 100 | Minus |
| 2R | 25286936 | 2R | 12305931..12305998 | 121..54 | 340 | 100 | Minus |
| 2R | 25286936 | 2R | 12306058..12306098 | 57..17 | 205 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:27:20 has no hits.
BS21880.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-18 10:40:45 Download gff for
BS21880.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SIP2-RG | 172..1939 | 17..1784 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:53:06 Download gff for
BS21880.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SIP2-RE | 172..1939 | 17..1784 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:13:25 Download gff for
BS21880.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SIP2-RE | 172..1939 | 17..1784 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:13:25 Download gff for
BS21880.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12304522..12304901 | 878..1257 | 100 | <- | Minus |
| 2R | 12304965..12305125 | 717..877 | 100 | <- | Minus |
| 2R | 12305220..12305471 | 465..716 | 100 | <- | Minus |
| 2R | 12303861..12304057 | 1588..1784 | 100 | <- | Minus |
| 2R | 12304128..12304457 | 1258..1587 | 100 | <- | Minus |
| 2R | 12305529..12305871 | 122..464 | 100 | <- | Minus |
| 2R | 12305931..12305998 | 54..121 | 100 | <- | Minus |
| 2R | 12306062..12306098 | 17..53 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:53:06 Download gff for
BS21880.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8191366..8191562 | 1588..1784 | 100 | <- | Minus |
| arm_2R | 8191633..8191962 | 1258..1587 | 100 | <- | Minus |
| arm_2R | 8192027..8192406 | 878..1257 | 100 | <- | Minus |
| arm_2R | 8192470..8192630 | 717..877 | 100 | <- | Minus |
| arm_2R | 8192725..8192976 | 465..716 | 100 | <- | Minus |
| arm_2R | 8193034..8193376 | 122..464 | 100 | <- | Minus |
| arm_2R | 8193436..8193503 | 54..121 | 100 | <- | Minus |
| arm_2R | 8193567..8193603 | 17..53 | 100 | | Minus |
BS21880.pep Sequence
Translation from 16 to 1785
> BS21880.pep
MNSSSVTPRSVRSNKAFLLRTAGKAEKQASDKATWSRTSSCGGVFSTPPT
QNGDGSPNKGRLSHIPNRRGASRSSIHSRKTSLERVTSSTKARPCVSTYS
LPNRRVEPEHKVVEPDRKTDIDELNPPKRNVVPIKTHAQSAQLVKSTTCE
PYQNVKKPEKMSHRRVLEMNRMRVFDTQKKKLENLQSEFMHKIRLMGSEL
RNQGVFKFVGLTVNDECKLVVHHDDLLRLPKSIPAESMNDLKTRCRAIVD
QGVLLIYDHIPRIQRAKNDLEASEKREETQKKLSNLVEEKMNLIVEEIEQ
LCGACSKQESPNKSLYREMSELRSQKQAMEVRYFDAQKEHTEQMNQLRIE
LDAKLKQELASRDQIIVELRKSLRRSEDMLSEQSIRLAENNSKLLTEDST
IEVLRSEVAKLKTVKEQMVKRLEEADKGLERARNSVDKNLKHIDYLEGEL
KEARELIVHLEQRPDAMDAGVKEKDLIIADLKLQLQSLEQHKKVMNKQVA
NTIKQHADFEELGGNYKEALQQISDLRETLSVTNAKLEMQSKLEVQLRKE
VSKMREQMVIDQKLLNARSELIATLQKNEEDSRTKLDQM*
BS21880.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:05:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SIP2-PA | 832 | CG13164-PA | 1..589 | 1..589 | 2948 | 100 | Plus |
| SIP2-PG | 589 | CG13164-PG | 1..589 | 1..589 | 2948 | 100 | Plus |
| SIP2-PE | 589 | CG13164-PE | 1..589 | 1..589 | 2948 | 100 | Plus |
| SIP2-PC | 681 | CG13164-PC | 1..589 | 1..589 | 2948 | 100 | Plus |
| Mhc-PL | 1936 | CG17927-PL | 844..1198 | 256..582 | 167 | 20.2 | Plus |
