BS21883.complete Sequence
2195 bp assembled on 2011-02-14
GenBank Submission: KX805121
> BS21883.complete
GAAGTTATCAGTCGACATGTCCTTCCTGCGCGGTTCCGTGAGCTATGTGT
GGTGCACCACCAGCGTCCTGGGAAAGGGAGCCACCGGTTCCGTGTTCCAG
GGGGTCAACAAAATCACCGGCGAATCGGTGGCGGTGAAGACCTTTAATCC
CTACAGTCACATGCGACCGGCTGATGTGCAGATGCGGGAGTTCGAAGCCC
TGAAGAAGGTCAACCACGAGAATATAGTAAAGCTGTTGGCGATCGAGGAG
GATCAAGAGGGGCGTGGTAAGGTGATCGTGATGGAGCTCTGCACAGGCGG
AAGTCTCTTTAACATCCTGGACGATCCTGAGAACTCGTACGGTCTGCCGG
AACACGAGTTCCTGCTGGTCTTGGAACACTTGTGCGCCGGAATGAAGCAC
TTGCGGGATAACAAGCTGGTGCATCGCGATCTCAAGCCCGGAAACATAAT
GAAGTTCATCTCGGAGGACGGGCAAACCATATACAAGCTTACTGATTTCG
GTGCTGCTAGAGAACTGGAGGATAATCAGCCGTTTGCCTCTCTATACGGC
ACAGAAGAGTATCTTCATCCCGATCTCTACGAGCGCGCTGTGCTGAGGAA
GTCAATCCAGCGATCGTTCACCGCCAATGTGGATTTGTGGTCGATTGGGG
TCACGCTCTACCATGTGGCCACCGGAAATCTGCCTTTTAGACCTTTTGGT
GGAAGGAAAAACCGAGAGACCATGCACCAAATCACCACCAAAAAGGCTTC
TGGGGTGATTTCCGGCACTCAGCTGTCCGAGAATGGACCAATTGAATGGT
CCACCACGTTGCCACCGCACGCCCATCTCTCGCAGGGACTGAAAACCCTG
GTGACGCCTCTTCTAGCTGGACTTCTCGAGGAGAATAGGGAGAAGACCTG
GTCTTTCGATCGGTTCTTCCATGAGGTGACGCTCATCCTCCGCAAGCGTG
TCATTCATGTGTTCTTCACCAATCGGACTAGTTCGGTGGAAGTGTTCCTG
GAGCCAGACGAGCAAATTGACAACTTCCGAGAGCGTATTTTCCTGCAAAC
AGAGGTGCCGCTGGAGAAGCAGATCCTTTTGTTCAACAACGAGCATCTGG
AGAAGAAGGTTACTCCACGAACGATAGCTAAAGCATTCCCTGCCACCACA
ACAGATCAGCCAATATTCCTCTACAGCAACGACGACAACAATGTTCAGTT
GCCCCAGCAATTAGATCTCCCCAAGTTCCCAGTGTTCCCTCCCAATGTTT
CAGTGGAGAACGACGCCAGTCTGGCAAAGTCCGCTTGCAGCGTTGGCCAT
GAATGCAAAAGACGCGTGGACATCTTTACTTCCATGGATATCCTTATTAA
GAAGGGAGTGGAGCACTTCATAGAGATGCTAGTGACCACAATAACTCTAC
TATTGAAAAAAACTGAGAGTTTTGACAACTTGCTTTCCACTGTGATTGAT
TATGCAGATGTGGTGCACAGCATGGCCAGAGTGACTAAAGGAGATCAGGA
GATAAAGACCCTGCTGACTGCCTTGGAAAATGTCAAAAGCGACTTTGATG
GAGCCGCGGATGTGATCTCGCAGATGCACAAACATTTTGTGATAGATGAC
GAACTTAACGATCAATGGACCTCCTCCATGCACGGAAAGAAGTGTCCTTG
CAAGACCAGAGCCAGTGCCCAGGCCAAGTATCTGGTAGAAAGGCTGCGGG
ACTCCTGGCAGCACTTGCTCCGGGATCGTGCAACGCGCACACTGACCTAC
AACGACGAACAGTTTCATGCCCTGGAGAAGATTAAAGTGGATCACAATGG
CAAACGGATAAAGGCCTTGCTTTTGGATAACGTAAATCCGACAGTGGCAC
AAATCGCAGAGTGCCTGGCGGACTGGTATAAGTTGGCTCAGACCGTCTAC
CTTAAAACTCAAATTTTGGAGAAGGACGTGCGCGATTGCGAAAGAAAGTT
GAACGGAATACGCGATGAGTTGTATCACGTTAAGTCGGAGCTGAAGCTGG
ATGTGGACACCAAGACCATAAACAACAATAATCAGCTGGCCAAGATAGAG
GAGCGGAATCGGCTAAGGGTCATGCAGCAGCAGCAACAGGAAGTTATGGC
TGTCATGAGAACGAACAGCGATATAATAAGTTTGCTTAGCAAACTGGGCA
TTACCAACGGAAGTCTGGAAAGTAGTTAGAAGCTTTCTAGACCAT
BS21883.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:41:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ik2-RC | 2163 | CG2615-PC | 1..2163 | 17..2179 | 10665 | 99.5 | Plus |
| ik2-RB | 2163 | CG2615-PB | 1..2163 | 17..2179 | 10665 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:41:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ik2-RC | 2551 | CG2615-RC | 177..2344 | 13..2180 | 10675 | 99.5 | Plus |
| ik2-RB | 2461 | CG2615-RB | 87..2254 | 13..2180 | 10675 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:41:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20676459..20677487 | 99..1127 | 5010 | 99.1 | Plus |
| 2L | 23513712 | 2L | 20678201..20678772 | 1609..2180 | 2845 | 99.8 | Plus |
| 2L | 23513712 | 2L | 20677542..20677823 | 1126..1407 | 1410 | 100 | Plus |
| 2L | 23513712 | 2L | 20678015..20678140 | 1483..1608 | 630 | 100 | Plus |
| 2L | 23513712 | 2L | 20676301..20676389 | 13..101 | 430 | 98.9 | Plus |
| 2L | 23513712 | 2L | 20677879..20677954 | 1408..1483 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:41:45 has no hits.
BS21883.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-14 18:28:38 Download gff for
BS21883.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ik2-RB | 72..2234 | 17..2179 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:59:49 Download gff for
BS21883.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ik2-RB | 91..2253 | 17..2179 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:30:12 Download gff for
BS21883.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ik2-RB | 91..2253 | 17..2179 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:30:12 Download gff for
BS21883.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20676305..20676388 | 17..100 | 100 | -> | Plus |
| 2L | 20676461..20677487 | 101..1127 | 99 | -> | Plus |
| 2L | 20677544..20677823 | 1128..1407 | 100 | -> | Plus |
| 2L | 20677879..20677954 | 1408..1483 | 100 | -> | Plus |
| 2L | 20678016..20678140 | 1484..1608 | 100 | -> | Plus |
| 2L | 20678201..20678771 | 1609..2179 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:59:49 Download gff for
BS21883.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20676305..20676388 | 17..100 | 100 | -> | Plus |
| arm_2L | 20676461..20677487 | 101..1127 | 99 | -> | Plus |
| arm_2L | 20677544..20677823 | 1128..1407 | 100 | -> | Plus |
| arm_2L | 20677879..20677954 | 1408..1483 | 100 | -> | Plus |
| arm_2L | 20678016..20678140 | 1484..1608 | 100 | -> | Plus |
| arm_2L | 20678201..20678771 | 1609..2179 | 99 | | Plus |
BS21883.pep Sequence
Translation from 16 to 2178
> BS21883.pep
MSFLRGSVSYVWCTTSVLGKGATGSVFQGVNKITGESVAVKTFNPYSHMR
PADVQMREFEALKKVNHENIVKLLAIEEDQEGRGKVIVMELCTGGSLFNI
LDDPENSYGLPEHEFLLVLEHLCAGMKHLRDNKLVHRDLKPGNIMKFISE
DGQTIYKLTDFGAARELEDNQPFASLYGTEEYLHPDLYERAVLRKSIQRS
FTANVDLWSIGVTLYHVATGNLPFRPFGGRKNRETMHQITTKKASGVISG
TQLSENGPIEWSTTLPPHAHLSQGLKTLVTPLLAGLLEENREKTWSFDRF
FHEVTLILRKRVIHVFFTNRTSSVEVFLEPDEQIDNFRERIFLQTEVPLE
KQILLFNNEHLEKKVTPRTIAKAFPATTTDQPIFLYSNDDNNVQLPQQLD
LPKFPVFPPNVSVENDASLAKSACSVGHECKRRVDIFTSMDILIKKGVEH
FIEMLVTTITLLLKKTESFDNLLSTVIDYADVVHSMARVTKGDQEIKTLL
TALENVKSDFDGAADVISQMHKHFVIDDELNDQWTSSMHGKKCPCKTRAS
AQAKYLVERLRDSWQHLLRDRATRTLTYNDEQFHALEKIKVDHNGKRIKA
LLLDNVNPTVAQIAECLADWYKLAQTVYLKTQILEKDVRDCERKLNGIRD
ELYHVKSELKLDVDTKTINNNNQLAKIEERNRLRVMQQQQQEVMAVMRTN
SDIISLLSKLGITNGSLESS*
BS21883.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:10:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ik2-PC | 720 | CG2615-PC | 1..720 | 1..720 | 3721 | 100 | Plus |
| ik2-PB | 720 | CG2615-PB | 1..720 | 1..720 | 3721 | 100 | Plus |
| ird5-PB | 717 | CG4201-PB | 7..376 | 12..369 | 324 | 28.9 | Plus |
| CG43143-PD | 1180 | CG11870-PD | 76..268 | 18..224 | 244 | 31.1 | Plus |
| CG43143-PG | 1199 | CG43143-PG | 76..268 | 18..224 | 244 | 31.1 | Plus |
