Clone BS21891 Report

Search the DGRC for BS21891

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:218
Well:91
Vector:pDNR-Dual
Associated Gene/Transcriptholn1-RA
Protein status:BS21891.pep: full length peptide match
Sequenced Size:992

Clone Sequence Records

BS21891.complete Sequence

992 bp assembled on 2011-02-02

GenBank Submission: KX804961

> BS21891.complete
GAAGTTATCAGTCGACATGGCGAGCAAAAGAAAGCACCAAGCATCCCAGA
AAGTGAAAGAGGAATCCTTCAAGAAACACACGCTTGACTCCGATGAAGAG
GATTCTGACGACTACGAAAGGGAATACCTCAATGATAGCGACATTGAGGG
CGGCGAGGAGGGCGTGGCAAAAGTGGAAGACGATGTGAAGGTAACACCCT
TCAATATGAAGGAAGAACTGGAGGAGGGACACTTCGACAAAGATGGTCAC
TACCATTGGAACAAGGAGACGGAAGCAAAGGACAATTGGTTGGACAACAT
AGACTGGGTTAAAATTGGCACACAGAAGAACGCCTTCGACCCGGCAAAAG
ATGAAGAAAACTCTTCCGATGAGGAGAAGAACGAACCCGTGGGCAAGGCC
TTTAACTTGTCCATGAACCTCATGAAAATGGTCGAGTTTATGAAACCGGG
AGAGACTGTCAAGATGACCCTGCAGCGTCTGGGTAAGCAGCGCCCCGTCC
TAACAACCCTTCAGAGGATTAAGCAGAAAAAGGCCGGCATCGTTGACCCA
AAGACACAGGAAATCTCTCAGCTCACCGAGCTGGCCAACGAGATTCTCTC
GAAGACGGGCAATATGGATATATATCAGGATACGTACGAAAGCATCAAGG
CCAAGATCGCCGATTTGCCAGGAACGAGCAAACCTAAAGTAGCCGATGAT
ATTGATATGTATGCAGATGATTTCGAAACGAAAGAATTGGAGCGCTCTAA
GACATCGTCGAGTGATAGCTCCAAACCAACGACGACTACCTCAGAGGTGA
CCTGGGAGTTTAAATGGTCGCAGGATGAGACTGATATCCAGGGACCCTTT
TCCACGGAGAAAATGTTGAAATGGTCCCAGGAGAACTACTTTAAAAACGG
AGTCTATGTGCGAAAGTGCGGCGAAAACACAAATTTCTATACAAGCAACC
GCATAGATTTCGATTTGTACTTGTAGAAGCTTTCTAGACCAT

BS21891.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:49:50
Subject Length Description Subject Range Query Range Score Percent Strand
holn1-RA 960 CG5198-PA 1..960 17..976 4800 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:49:51
Subject Length Description Subject Range Query Range Score Percent Strand
holn1-RA 1198 CG5198-RA 92..1051 17..976 4800 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:49:49
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10436507..10437169 314..976 3315 100 Plus
2L 23513712 2L 10436247..10436441 119..313 975 100 Plus
2L 23513712 2L 10436086..10436194 17..125 530 99.1 Plus
Blast to na_te.dros performed on 2014-11-27 00:49:50 has no hits.

BS21891.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-14 14:32:01 Download gff for BS21891.complete
Subject Subject Range Query Range Percent Splice Strand
CG5198-RA 96..1055 17..976 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:35:31 Download gff for BS21891.complete
Subject Subject Range Query Range Percent Splice Strand
holn1-RA 92..1051 17..976 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:10:56 Download gff for BS21891.complete
Subject Subject Range Query Range Percent Splice Strand
holn1-RA 92..1051 17..976 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:10:56 Download gff for BS21891.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10436249..10436441 121..313 100 -> Plus
2L 10436086..10436189 17..120 100 -> Plus
2L 10436507..10437169 314..976 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:35:31 Download gff for BS21891.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10436086..10436189 17..120 100 -> Plus
arm_2L 10436249..10436441 121..313 100 -> Plus
arm_2L 10436507..10437169 314..976 100   Plus

BS21891.pep Sequence

Translation from 16 to 975

> BS21891.pep
MASKRKHQASQKVKEESFKKHTLDSDEEDSDDYEREYLNDSDIEGGEEGV
AKVEDDVKVTPFNMKEELEEGHFDKDGHYHWNKETEAKDNWLDNIDWVKI
GTQKNAFDPAKDEENSSDEEKNEPVGKAFNLSMNLMKMVEFMKPGETVKM
TLQRLGKQRPVLTTLQRIKQKKAGIVDPKTQEISQLTELANEILSKTGNM
DIYQDTYESIKAKIADLPGTSKPKVADDIDMYADDFETKELERSKTSSSD
SSKPTTTTSEVTWEFKWSQDETDIQGPFSTEKMLKWSQENYFKNGVYVRK
CGENTNFYTSNRIDFDLYL*

BS21891.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:05:19
Subject Length Description Subject Range Query Range Score Percent Strand
holn1-PA 319 CG5198-PA 1..319 1..319 1682 100 Plus