BS21892.complete Sequence
2414 bp assembled on 2011-02-18
GenBank Submission: KX803250
> BS21892.complete
GAAGTTATCAGTCGACATGCTGCGCATTCCTGGAATGCCCCTTCTTCCGG
GGACTCTCTTTCGCGATGTATCCAAGGGACATTACCCCAAACCGCAATCG
CTGGCCAATGTCCAAGGTCTGAGCATGCTGAGTGATCGCCAGCAACCGGC
TCCTGTGGAATCGGGCAGCGTTACGGTGGACATAAGCTGTCCCCCAGTTG
GGGCGTCCTCCATATATCCGCCACGTTCGGGTCCCCGTATGCCTCCATGG
CTGGCGTATGACAAGAAGGTGCTGTGCTTCCATGCCTACTTCAAGCAAAC
CCTTCAGGAGGTCTACCATGCGCCCTATCTGGTGCGCAAGGTTAAGATCT
ACTACTATCTGGAAGATGGTACTTTAGAGATCTACGAGCCCCGGGTGGAC
AACTCGGGAATTGTGCAGGGATGTGTAGTTCATAGGCAGCGGGTCCAGAA
GGCGCCGCCGTGCGATAATGAGTTCATGTCCCTCATCGATCTGAACGTGG
ATCAGACTGTTCAGATATTTGATCGTCAGTATCATATCACCGATTGCGAT
CCGTTCACAAGAACTTTCTTAAACAAACGCGGCATAACCGTTCCCGATCC
GGTCAAATCGCCATGCGATCCCACCGAGGAGCAACGAAAGCGTGAAAACC
AACCGCGATCTGGTAATTTAATCCCAAAGAATCATCCGTTTGCCCAGTTC
CTCAAGTACGATAGGCAAATACTCAAGTTCCAGGCGTACTGGGACGATAG
AACCGAGTTCGGAGACGTACGCAAGCTGGAGCTGTGCTACTATCTCTCCG
ACGATACCATCGAAATCAAGGAGCAGCACATTCGCAACTCAGGTCGCGAC
GGCCCAACCGTTTTTCTTAAACGCGGGCGCTTAGCTCGAGAGTTCGAAGG
ACTCCAGCTGCCAGGACAGATGACCCCGATGACGCTACTGAACGTCCTGG
GCACCAACATGCGCAACGTGCGCTACTGCGTGGATCCGCTGAACACTGGA
AACAAGGAGATTCATTACTATAGGGAAAAGGATCTCCAGATAGGCAGTGT
GATAAACGTGTATGGCCGTGCGGTGGTGATAACCGAACTGGATCCCTTCA
CCCAGAACTATTACCGCCAGCGATATGGCATACAGGATTTTACCCCACTG
CCGATCCCCGCCAGATCCGATGATTGTGCTGACCATAGATCGGAACGACA
ATTGCCACCGTACAATGGATGGGGTAGCTACGAGGATTCGGTGGGCAATT
GCATATCGGTCGAACCGAAGCCGCCAAAGTCCGATTTCAAAAAGTTCATC
AAATACGATCGTTATGTGCTCCGCTTTGGCGCCAAAATGCTCTCGACCAT
CAAGGCGAATTGCGAGCGAATCTTTGTGATTAGCTACTATCTATGCGATG
ATACGCTGCAAATCCAGGAGATCGCCGTGCGGAACTCCGGATTCCTCGGT
GGTGAGTTCATGAAGCGCACACGCTTGGAGTTGCCTGGCCAGGAGAGGTT
CTCATGCAAGCAGCCGCAGTACTATATGCCATGGAACTTCTTTGTCGGAT
CGACTATGTCGCTGAAGGACTTCATTTTTCACATAGTCTCGGCGGACGAG
TACACGCTTATGTACATGGAGCACCATCCGGAGATCTTTCCCCATGCGAA
TGTGGGTGTGATCATGGAGAAGGTGAAGAGTGCCCTGCAGAATCGCATGG
CGGAGTTTGTGGGATCGTGTGTTCCGGACTGTACGGATCTTGAGAAGAAG
CGTGATGTCTTTGTGTCCTTCGAGAGTTTCAAGGGCGCCCTGATCAGCAT
TATGGGTAACCAGATCAGCGATCACGAGATCATCAGCCTCTGCCGGCACT
TTTCGGCGGAGAAGAGTCAACCAAATGCCTGCGATCGGTCCACGGTGCGG
GCGGCGGCTCATCTCGAGCTTAAGAGAACCCTGTGGAATGCTCGGGATGA
TCTGATGGAGCACTTCCATCACATCAATCCGACCAACCAGCCATTCCTGC
CCGAAGTTAAGGTGAGATCGGCACTGCGGGGATGTCGCCTGCCATTCTCC
TTGGAACTGATCGACAATATACTCTCGATTCTGAATCGCAACGAGTGCGA
CGACATCGAGGTGTGCGACCTAATGAACTTCATCGACGTATCATGCGGCA
AGGGCTGCGACATGCTGCCCGTGAACCACGCCTTCGAGCTCTGCCCCAAG
ATCCCGTTCCTGAACAAGGGTCGTGTGGTGAACTTCACTTGCTTCCTGAG
GGAACTTAATCTGCCCCTCAACTTGCCAGCCGGCGGCGAGAAGAACAACG
ATGCGATTGCAGAGGGTGGAAGGATAATGCCACCATCGGCCATGCCCGAT
ACCGATGCCCACAAGGCGAATGAGGACGACGCACAGCACATGGCTTGAAA
GCTTTCTAGACCAT
BS21892.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:12:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Efhc1.1-RA | 2382 | CG8959-PA | 1..2382 | 17..2398 | 11910 | 100 | Plus |
| Efhc1.2-RA | 2298 | CG11048-PA | 230..529 | 240..539 | 300 | 73.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:12:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Efhc1.1-RA | 2559 | CG8959-RA | 77..2458 | 17..2398 | 11910 | 100 | Plus |
| Efhc1.2-RA | 2572 | CG11048-RA | 401..700 | 240..539 | 300 | 73.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:12:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15780499..15782007 | 2398..890 | 7545 | 100 | Minus |
| X | 23542271 | X | 15782978..15783525 | 615..68 | 2740 | 100 | Minus |
| X | 23542271 | X | 15782647..15782922 | 890..615 | 1380 | 100 | Minus |
| 2R | 25286936 | 2R | 20240390..20240689 | 240..539 | 300 | 73.3 | Plus |
| X | 23542271 | X | 15783581..15783634 | 70..17 | 270 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:12:36 has no hits.
BS21892.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-18 10:39:41 Download gff for
BS21892.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8959-RA | 77..2457 | 17..2397 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:08:45 Download gff for
BS21892.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Efhc1.1-RA | 77..2457 | 17..2397 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:13:12 Download gff for
BS21892.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Efhc1.1-RA | 77..2457 | 17..2397 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:13:12 Download gff for
BS21892.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15783584..15783634 | 17..67 | 100 | | Minus |
| X | 15780500..15782007 | 890..2397 | 100 | <- | Minus |
| X | 15782648..15782921 | 616..889 | 100 | <- | Minus |
| X | 15782978..15783525 | 68..615 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:08:45 Download gff for
BS21892.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15674533..15676040 | 890..2397 | 100 | <- | Minus |
| arm_X | 15676681..15676954 | 616..889 | 100 | <- | Minus |
| arm_X | 15677011..15677558 | 68..615 | 100 | <- | Minus |
| arm_X | 15677617..15677667 | 17..67 | 100 | | Minus |
BS21892.pep Sequence
Translation from 16 to 2397
> BS21892.pep
MLRIPGMPLLPGTLFRDVSKGHYPKPQSLANVQGLSMLSDRQQPAPVESG
SVTVDISCPPVGASSIYPPRSGPRMPPWLAYDKKVLCFHAYFKQTLQEVY
HAPYLVRKVKIYYYLEDGTLEIYEPRVDNSGIVQGCVVHRQRVQKAPPCD
NEFMSLIDLNVDQTVQIFDRQYHITDCDPFTRTFLNKRGITVPDPVKSPC
DPTEEQRKRENQPRSGNLIPKNHPFAQFLKYDRQILKFQAYWDDRTEFGD
VRKLELCYYLSDDTIEIKEQHIRNSGRDGPTVFLKRGRLAREFEGLQLPG
QMTPMTLLNVLGTNMRNVRYCVDPLNTGNKEIHYYREKDLQIGSVINVYG
RAVVITELDPFTQNYYRQRYGIQDFTPLPIPARSDDCADHRSERQLPPYN
GWGSYEDSVGNCISVEPKPPKSDFKKFIKYDRYVLRFGAKMLSTIKANCE
RIFVISYYLCDDTLQIQEIAVRNSGFLGGEFMKRTRLELPGQERFSCKQP
QYYMPWNFFVGSTMSLKDFIFHIVSADEYTLMYMEHHPEIFPHANVGVIM
EKVKSALQNRMAEFVGSCVPDCTDLEKKRDVFVSFESFKGALISIMGNQI
SDHEIISLCRHFSAEKSQPNACDRSTVRAAAHLELKRTLWNARDDLMEHF
HHINPTNQPFLPEVKVRSALRGCRLPFSLELIDNILSILNRNECDDIEVC
DLMNFIDVSCGKGCDMLPVNHAFELCPKIPFLNKGRVVNFTCFLRELNLP
LNLPAGGEKNNDAIAEGGRIMPPSAMPDTDAHKANEDDAQHMA*
BS21892.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:28:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Efhc1.1-PA | 793 | CG8959-PA | 1..793 | 1..793 | 4269 | 100 | Plus |
| Efhc1.2-PA | 765 | CG11048-PA | 1..756 | 1..749 | 2385 | 58.5 | Plus |
