BS21893.complete Sequence
2798 bp assembled on 2011-02-14
GenBank Submission: KX803268
> BS21893.complete
GAAGTTATCAGTCGACATGAGCAGGGAAAATCGCTCGAAAATCGCTTTCA
AGCGAAAAACGAGTAACGGAAACAAGAGTGGCCAGTTAACGGATTACGAA
CGCATCCGAGGGGATGTGGAAATAGTTGTTCCGAGCCCACCTCCTACTCC
AGCTGTGCCACCCAGTGCATCCTTAGGGAAACTTAAGATAAAGTTGAGTT
CTGCCAAAATTTCCTTACGAAAAAACGCACAGACTTCGCAGAATAATCTG
CAGACCGCTCCCTTACCAGACGCAGTGCGTCGCAAATCAGCACCACAACT
TTTTACCTTTACTATTGCCCCAAAGAGCGAAGTGACTTCGAAAATACATC
TACCCTCAGTGCCAAAGCTACCGGGTTTGGCACCAAAGAGCTCCATCCGA
AGATCTAGGACTTTGGGTTTGTCGAATAGTGCCCAGGGTGCAGGGTCATC
AGGTACAGGGCTATCCAATGTCGAACTCGGTGTGCAGGATAGGGACAGTG
GCAGTGAGCCCACTAGCAGCTTGGCTGGAGGAGGTAGCTCTACTTCGCCT
GAATCCCTTTTGGATAACATACTCAGCGGTGCCTCCTCCGTTTCCGTACA
AAGTAGTAGCAGCAGCCAAGCCAGTAATGCTACGGTGGCACAGCCCATAA
AAGCAAAGGAGCAACTGCATCCCAAGAGGCTACTCAGCTTGAAGGCTTCT
CCGGAGCTGAGAGTATCTCCACCAACTCCAGACACTACTCAACCCCAGGT
CCAGATGCCAACTCAACTTCTGCTTTCACTGACTCCAAGACCAGAGGTCT
TTGATGCACCCTCACCACTGACCAGAAGTCCCTCACGATCTCCCGGAATC
TCTCCCCCCGTGTCACCATCACCCAGCATTACTCTCAGACCGAGTACCCC
TCCCGAGAACACCGTAATCTTCACAGATGATCTCAAGTGCGGCATCTGCC
TGGATGTTTACACAGATCCCAGGACACTGCATTGCTTGCATTCCTTTTGT
CTCCAATGTCTGGTCAGCGAGAACTTTAAGGACGAATCTTTGTGGGATCA
GGATCAAGCTCGCAGTGAGGAGCCCTCGAATTACAGTCTAAGATCGGAGA
TGGGTGGATCTAGTGCGGAACTTACTGCGACAGTATCACCCGCCAGGCAG
CGAGGTTCCAGTTTTACATTGAGAAGAAAGAAGTCCATGGATCGCCTAGT
GATAAGGTCCAAGAGTGACGGAAAGCGATCGACCAGTTCCATCGGTACCC
GATTCACCGGAAGTTTTGCCAGCGAGGTATCCACCCGCTGCATCCGCTGT
CATACCTGTAACTATCCCACGGATCTTTCGTTAGGTGGAGTACGTCAGCT
TCCACAGAACTACTTGCTAGTGAGACGCATAGAGGTCTTGCGACTACAGG
CTGGGGAGGATGTAATCTCCAGGGTCTGGTGTTCTCTTTGCACAGAGGAG
ATTAGCGCCACCTACCACTGCATTAGCTGCACTTTAAACCTCTGCACCTT
GTGCAAGGAGGCACACGAAAGGCAAAGGAGCACCGCTAGCCATCGAATGA
GAAGCATCCTGGAACTTAGACGCGCCAGGAAGCAAAAGCAACAGCAGATG
GGATTGGGAGATAGTAGCAAACTAGTGCTACGATGCGGAATCCATACCAA
CTTTGAGCTGAAGGCATTTTGCACCAACTGCCGTCAACTGGCATGCACCG
ACTGTTTGGTGATCCTTCATAAAGGCCATCGACATGAGACCATATCCCGG
GCAATTGGACATCAGGGTAAACTACTCAAAGAAGCTACGGATCAAACTCG
TCCCCTCTGTCAATATGCGGAGCACTCCATTGAGAGGTTGAATGCCATAG
CACGTGGAATCAACGACCGGTGTGACGACATCCAGACTCAAGTGGAGCGG
TACATGCAGCAGTACATGGATGCCCTGACAGTCCATCGCAAGACTCTGCT
CCAGCAAATCAGCAGAGCTAGGGAGTCCAAAGTGGAGGTAGTGCTCAAGC
AGCAACTTGATTTGGAGAAACGCACTCAGCAGGCCATGGATGCGGTTAGA
TTTAGCCAAGAGCTGTGCGAGATTGGTGCTGATGTAGAGATTCTGAGTTA
TGTGACTATACTTCTAAGGCGTTTGGAGTACTGTCAGCAATTTAAGCCGC
CTGTGGATCCCAAGATATCCGACTCGCTTCACTTCCTACCAAAAATCCGT
GCTCCGTCGACAAAGGACCAGCGCGATATCCCTCTATATGGCATCATCAC
CATGCAGGTAGTGGAGCCTAGTCTATGCACCCTTGAGTGGGAGGGATTTT
CACAGCTGCGCCTCCACAAAAAAGCGGATCTTCTGCTTCACTCTAGAGAT
GCCGACGGGGTTTCCCTCTGCCACGGTGGCCTGGAGATCAACTGCATGCT
GAAGTACAAGGACTCCAGTTCCAAGTTTCTACCCGTTGAGGTGTCGGACA
ATCGTGATGGCACCTACAACATATCCTTCACCCCGGATGCCCAGGGCACG
TTGATTCTCACGATCACCATTAACGACCGGCCCATCAAGGGAGGTCCTTT
CACTTTTCAAGCGCGACAGGTTCGTCCGCATACGGGCATCTACCACTGCT
GCTCCTTCTGTTCCGGAAAGGGCAACCGGAACGTGATGTGCTCGTGTGAG
GGTCATATGCCTGGATATAGTGGCTGCGGTCATGGACATGCTGGACATCC
AGGGAGACGTCATTGGTCCTGCTGTGGAAATGTCCTTGAGAACTCGGAAT
GCAATGTGGCCAACAAACTGCTTAATTCTTAAAAGCTTTCTAGACCAT
BS21893.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:42:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8419-RA | 2766 | CG8419-PA | 1..2766 | 17..2782 | 13830 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:42:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8419-RA | 3240 | CG8419-RA | 108..2874 | 16..2782 | 13835 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:42:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8206278..8207469 | 16..1207 | 5960 | 100 | Plus |
| 2L | 23513712 | 2L | 8208652..8209271 | 2163..2782 | 3100 | 100 | Plus |
| 2L | 23513712 | 2L | 8207838..8208396 | 1457..2015 | 2795 | 100 | Plus |
| 2L | 23513712 | 2L | 8207526..8207776 | 1207..1457 | 1255 | 100 | Plus |
| 2L | 23513712 | 2L | 8208449..8208598 | 2015..2164 | 750 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:42:23 has no hits.
BS21893.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-14 18:28:39 Download gff for
BS21893.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8419-RA | 74..2837 | 17..2780 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:00:03 Download gff for
BS21893.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8419-RA | 109..2872 | 17..2780 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:30:23 Download gff for
BS21893.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8419-RA | 109..2872 | 17..2780 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:30:23 Download gff for
BS21893.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8206279..8207469 | 17..1207 | 100 | -> | Plus |
| 2L | 8207527..8207775 | 1208..1456 | 100 | -> | Plus |
| 2L | 8207838..8208396 | 1457..2015 | 100 | -> | Plus |
| 2L | 8208450..8208598 | 2016..2164 | 100 | -> | Plus |
| 2L | 8208654..8209269 | 2165..2780 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:00:03 Download gff for
BS21893.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8206279..8207469 | 17..1207 | 100 | -> | Plus |
| arm_2L | 8207527..8207775 | 1208..1456 | 100 | -> | Plus |
| arm_2L | 8207838..8208396 | 1457..2015 | 100 | -> | Plus |
| arm_2L | 8208450..8208598 | 2016..2164 | 100 | -> | Plus |
| arm_2L | 8208654..8209269 | 2165..2780 | 100 | | Plus |
BS21893.pep Sequence
Translation from 16 to 2781
> BS21893.pep
MSRENRSKIAFKRKTSNGNKSGQLTDYERIRGDVEIVVPSPPPTPAVPPS
ASLGKLKIKLSSAKISLRKNAQTSQNNLQTAPLPDAVRRKSAPQLFTFTI
APKSEVTSKIHLPSVPKLPGLAPKSSIRRSRTLGLSNSAQGAGSSGTGLS
NVELGVQDRDSGSEPTSSLAGGGSSTSPESLLDNILSGASSVSVQSSSSS
QASNATVAQPIKAKEQLHPKRLLSLKASPELRVSPPTPDTTQPQVQMPTQ
LLLSLTPRPEVFDAPSPLTRSPSRSPGISPPVSPSPSITLRPSTPPENTV
IFTDDLKCGICLDVYTDPRTLHCLHSFCLQCLVSENFKDESLWDQDQARS
EEPSNYSLRSEMGGSSAELTATVSPARQRGSSFTLRRKKSMDRLVIRSKS
DGKRSTSSIGTRFTGSFASEVSTRCIRCHTCNYPTDLSLGGVRQLPQNYL
LVRRIEVLRLQAGEDVISRVWCSLCTEEISATYHCISCTLNLCTLCKEAH
ERQRSTASHRMRSILELRRARKQKQQQMGLGDSSKLVLRCGIHTNFELKA
FCTNCRQLACTDCLVILHKGHRHETISRAIGHQGKLLKEATDQTRPLCQY
AEHSIERLNAIARGINDRCDDIQTQVERYMQQYMDALTVHRKTLLQQISR
ARESKVEVVLKQQLDLEKRTQQAMDAVRFSQELCEIGADVEILSYVTILL
RRLEYCQQFKPPVDPKISDSLHFLPKIRAPSTKDQRDIPLYGIITMQVVE
PSLCTLEWEGFSQLRLHKKADLLLHSRDADGVSLCHGGLEINCMLKYKDS
SSKFLPVEVSDNRDGTYNISFTPDAQGTLILTITINDRPIKGGPFTFQAR
QVRPHTGIYHCCSFCSGKGNRNVMCSCEGHMPGYSGCGHGHAGHPGRRHW
SCCGNVLENSECNVANKLLNS*
BS21893.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:10:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8419-PA | 921 | CG8419-PA | 1..921 | 1..921 | 4796 | 100 | Plus |
| mei-P26-PD | 1189 | CG12218-PD | 33..478 | 177..693 | 221 | 21.2 | Plus |
| mei-P26-PB | 1189 | CG12218-PB | 33..478 | 177..693 | 221 | 21.2 | Plus |
| mei-P26-PA | 1189 | CG12218-PA | 33..478 | 177..693 | 221 | 21.2 | Plus |
| bon-PD | 1119 | CG5206-PD | 176..418 | 470..717 | 210 | 24.8 | Plus |
