BS21911.complete Sequence
1139 bp assembled on 2011-01-25
GenBank Submission: KX801699
> BS21911.complete
GAAGTTATCAGTCGACATGGGCGATAATGTGATTCCTGCTCCGCTTAGCC
GTATCCCGGGCACCAGCCAGGCGAAGGAGAAGCACAGCAAGGACCTGAAG
ACCCTCACCTATCCGCAGCTGCTGGAGATTAAGGACAGGCAGTCTCACTT
TCTGTCGTTCAAAAAGCGTTTGCACCAACTGCCGGACAAGGGAAAGCGTC
TGCAGGAGTCGTACGACAAATTACTGGCCGAGATCAGGAGGCGGGATGAA
GTAGAGGAAGCGACTCGAATGTTGAGCGGTCTCAACATTGTCGAAAAGGG
CAAAATTGCTCTCAACAATCTGGAGTGGAATGGCAGAAACACGGACGAGG
GCGCCCATGTGGACGACATTCTGGACAGCGATGATGAGGTGGAGATGGAT
CCGCTGCGGATTATAGCGCAGGGAACAATGCACGAGAAGAAGGTCAAGGT
TTTGCCTCCGCCAACGAGTTTCATTACGGCAGATGACCTGGCGGATATCG
AGGAGTTTAAGAAACCAACCGACTCCCCAGATTCCGCTTTGGCAGGACAT
AGTGACACCAGTTCCCTTCCAGCCGAAATCGTAGAAATCGACGCCAGTCA
AGTGGCCGCAAAGCTGAGCAGGGAGCTGCCTCCCGATCAGCATGCCCTCT
ACCTCATCGATAAGACGGAAACAAATGTGAATACTCCTAGGGAAAAGTTT
ATGCCATTCCGCACCACGAAGTCCAATGTCCACAATCCCGACAAGGAGCG
CGTGCGCAAAAAGGGCAAGCATTGGGAAATAACGGCAGCAACTCCGCCAC
TCATCCAGCACAAAGAGGCCCAGTTGGTGCCATTGGCTGAGTCGGCTGCG
TTACAGATTGATTACATGCAAAGAGTAAAGGAGGTTCGCATTCAGCAGGC
TGAACAGCGGCTGGCCAGGCTTAAAGACTCTCGACTCCGACTTGGCCTGC
CCGAGGAATCGATTGTGAAAACCAAGGAATCCTTCCGCAACTACCGTGAT
CCCCAAGACACTTTTCTCATCGAAGGCAGGCAAAAAGCCAGCGAAGCGAA
TGAAGTGCAAGATCCAACTGTTCAAGACAGAGGATCGTCCGCCAGTGGCA
TTCATTACACGGTGTTCGAGTAAAAGCTTTCTAGACCAT
BS21911.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:06:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3773-RA | 1107 | CG3773-PA | 1..1107 | 17..1123 | 5400 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:06:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3773-RA | 1247 | CG3773-RA | 36..1142 | 17..1123 | 5400 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:06:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19229711..19230429 | 163..881 | 3505 | 99.2 | Plus |
| 3R | 32079331 | 3R | 19230483..19230727 | 879..1123 | 1195 | 99.2 | Plus |
| 3R | 32079331 | 3R | 19229498..19229643 | 17..162 | 715 | 99.3 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:06:11 has no hits.
BS21911.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:17:00 Download gff for
BS21911.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3773-RA | 6..1110 | 17..1121 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:48:09 Download gff for
BS21911.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3773-RA | 6..1110 | 17..1121 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:06:34 Download gff for
BS21911.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3773-RA | 36..1140 | 17..1121 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:06:34 Download gff for
BS21911.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19229498..19229643 | 17..162 | 99 | -> | Plus |
| 3R | 19229711..19230428 | 163..880 | 99 | -> | Plus |
| 3R | 19230485..19230725 | 881..1121 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:48:09 Download gff for
BS21911.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15055220..15055365 | 17..162 | 99 | -> | Plus |
| arm_3R | 15055433..15056150 | 163..880 | 99 | -> | Plus |
| arm_3R | 15056207..15056447 | 881..1121 | 99 | | Plus |
BS21911.pep Sequence
Translation from 16 to 1122
> BS21911.pep
MGDNVIPAPLSRIPGTSQAKEKHSKDLKTLTYPQLLEIKDRQSHFLSFKK
RLHQLPDKGKRLQESYDKLLAEIRRRDEVEEATRMLSGLNIVEKGKIALN
NLEWNGRNTDEGAHVDDILDSDDEVEMDPLRIIAQGTMHEKKVKVLPPPT
SFITADDLADIEEFKKPTDSPDSALAGHSDTSSLPAEIVEIDASQVAAKL
SRELPPDQHALYLIDKTETNVNTPREKFMPFRTTKSNVHNPDKERVRKKG
KHWEITAATPPLIQHKEAQLVPLAESAALQIDYMQRVKEVRIQQAEQRLA
RLKDSRLRLGLPEESIVKTKESFRNYRDPQDTFLIEGRQKASEANEVQDP
TVQDRGSSASGIHYTVFE*
BS21911.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:09:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3773-PA | 368 | CG3773-PA | 1..368 | 1..368 | 1880 | 100 | Plus |
