Clone BS21912 Report

Search the DGRC for BS21912

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:219
Well:12
Vector:pDNR-Dual
Associated Gene/TranscriptVhaAC39-2-RA
Protein status:BS21912.pep: full length peptide match
Sequenced Size:1085

Clone Sequence Records

BS21912.complete Sequence

1085 bp assembled on 2011-03-18

GenBank Submission: KX800532

> BS21912.complete
GAAGTTATCAGTCGACATGTCGATGATATTCAACACGGAGTATGGCTACC
TGGAGGCCCTAACGCGCGGATTCAAGAACGGCATGCTAAAGCACTCGGAC
TATCTAAATCTGACCCAGTGTGAATCCCTCGAGGACGTAATGATCAGCAT
CCAGGGCACGGATTACGGTCTCATCTTTGGTGGCGAACAATCAGCGCCGT
CCGTTGAGGTGATCGAAAGATGCCTTAGGGATCGTCTGCTGCAGCAATAC
TACTACATACGCAGTCATTCGACGGAGCCGCTGACCACCTTTATGGAGTT
CATACGATATCCGTTCATGATCGATAATGTGGCGCTTCTGGTCGCTGGCC
TAAACAATCACCGATCCATGAAGCGTCTGCTAAGAATGTGTCATCCGCTG
GGCGAATTCGATCAACTGGGCGCCATCGAAGTGGCCTCGAATTCTGCGGA
GCTCTTCGACGCCGTTCTAATTGACACGCCCATCGCTCGGTTTGTGCCAC
GCGATTTGCCCATGGAGTCGTTGCGTTACCTCGACGTGGAGATTGTGCGT
GCCCATCTGTATCGTGCTTATTTGGAGAAATTCTACGCCTATTGCAGCCA
ACTGGGCGGCAATACCGCCAACGTGATGACCAATCTATTGTCCTTCGAGG
CGGATCGTCGGACCATTACAATAGCTGTGAACGCTATTGGCAGTGATATC
ATACCGAAGGAGCGTCTAAAGATGTTCCCCACCTGTGGCTACCTGCCCAA
AATAGCCTTGGCCTCCATGTCCACTTTAAATGATACGGATAAAATAAGGG
ATGTTTGCAATGTGTTCGATGGCTATGGCAAAATGTTTGACAATTTGGAG
CGCGACTCGGACGGCATGATTACGCTGGAGGACCGCTTTCTCATGATGGA
GGCCAAGAAGAATGTGCAGACCTTCCTGCAGCAGTACCATTTCGGGATCT
TCTACTCGTTCATTAAACTTAAACAGTTGGAGGTACGCAATATCGTCTGG
ATTAGCGAATGCATAGCGCAGCGACAGACGGACAGAATCAACGCCTTCAT
TCCCATACCCTTGGACTAGAAGCTTTCTAGACCAT

BS21912.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:35:24
Subject Length Description Subject Range Query Range Score Percent Strand
VhaAC39-2-RA 1053 CG4624-PA 1..1053 17..1069 5265 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:35:25
Subject Length Description Subject Range Query Range Score Percent Strand
VhaAC39-2-RA 1233 CG4624-RA 71..1132 10..1071 5280 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:35:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23158554..23159246 702..10 3435 99.7 Minus
3R 32079331 3R 23158118..23158490 1071..699 1850 99.7 Minus
Blast to na_te.dros performed on 2014-11-26 14:35:23 has no hits.

BS21912.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-18 12:09:29 Download gff for BS21912.complete
Subject Subject Range Query Range Percent Splice Strand
VhaAC39-2-RA 78..1130 17..1069 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:38:05 Download gff for BS21912.complete
Subject Subject Range Query Range Percent Splice Strand
VhaAC39-2-RA 78..1130 17..1069 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:56:11 Download gff for BS21912.complete
Subject Subject Range Query Range Percent Splice Strand
VhaAC39-2-RA 78..1130 17..1069 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:56:11 Download gff for BS21912.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23158120..23158486 703..1069 100 <- Minus
3R 23158554..23159239 17..702 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:38:05 Download gff for BS21912.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18983842..18984208 703..1069 100 <- Minus
arm_3R 18984276..18984961 17..702 100   Minus

BS21912.pep Sequence

Translation from 16 to 1068

> BS21912.pep
MSMIFNTEYGYLEALTRGFKNGMLKHSDYLNLTQCESLEDVMISIQGTDY
GLIFGGEQSAPSVEVIERCLRDRLLQQYYYIRSHSTEPLTTFMEFIRYPF
MIDNVALLVAGLNNHRSMKRLLRMCHPLGEFDQLGAIEVASNSAELFDAV
LIDTPIARFVPRDLPMESLRYLDVEIVRAHLYRAYLEKFYAYCSQLGGNT
ANVMTNLLSFEADRRTITIAVNAIGSDIIPKERLKMFPTCGYLPKIALAS
MSTLNDTDKIRDVCNVFDGYGKMFDNLERDSDGMITLEDRFLMMEAKKNV
QTFLQQYHFGIFYSFIKLKQLEVRNIVWISECIAQRQTDRINAFIPIPLD
*

BS21912.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:07:12
Subject Length Description Subject Range Query Range Score Percent Strand
VhaAC39-2-PA 350 CG4624-PA 1..350 1..350 1812 100 Plus
VhaAC39-1-PA 350 CG2934-PA 7..349 4..347 863 46.2 Plus