BS21912.complete Sequence
1085 bp assembled on 2011-03-18
GenBank Submission: KX800532
> BS21912.complete
GAAGTTATCAGTCGACATGTCGATGATATTCAACACGGAGTATGGCTACC
TGGAGGCCCTAACGCGCGGATTCAAGAACGGCATGCTAAAGCACTCGGAC
TATCTAAATCTGACCCAGTGTGAATCCCTCGAGGACGTAATGATCAGCAT
CCAGGGCACGGATTACGGTCTCATCTTTGGTGGCGAACAATCAGCGCCGT
CCGTTGAGGTGATCGAAAGATGCCTTAGGGATCGTCTGCTGCAGCAATAC
TACTACATACGCAGTCATTCGACGGAGCCGCTGACCACCTTTATGGAGTT
CATACGATATCCGTTCATGATCGATAATGTGGCGCTTCTGGTCGCTGGCC
TAAACAATCACCGATCCATGAAGCGTCTGCTAAGAATGTGTCATCCGCTG
GGCGAATTCGATCAACTGGGCGCCATCGAAGTGGCCTCGAATTCTGCGGA
GCTCTTCGACGCCGTTCTAATTGACACGCCCATCGCTCGGTTTGTGCCAC
GCGATTTGCCCATGGAGTCGTTGCGTTACCTCGACGTGGAGATTGTGCGT
GCCCATCTGTATCGTGCTTATTTGGAGAAATTCTACGCCTATTGCAGCCA
ACTGGGCGGCAATACCGCCAACGTGATGACCAATCTATTGTCCTTCGAGG
CGGATCGTCGGACCATTACAATAGCTGTGAACGCTATTGGCAGTGATATC
ATACCGAAGGAGCGTCTAAAGATGTTCCCCACCTGTGGCTACCTGCCCAA
AATAGCCTTGGCCTCCATGTCCACTTTAAATGATACGGATAAAATAAGGG
ATGTTTGCAATGTGTTCGATGGCTATGGCAAAATGTTTGACAATTTGGAG
CGCGACTCGGACGGCATGATTACGCTGGAGGACCGCTTTCTCATGATGGA
GGCCAAGAAGAATGTGCAGACCTTCCTGCAGCAGTACCATTTCGGGATCT
TCTACTCGTTCATTAAACTTAAACAGTTGGAGGTACGCAATATCGTCTGG
ATTAGCGAATGCATAGCGCAGCGACAGACGGACAGAATCAACGCCTTCAT
TCCCATACCCTTGGACTAGAAGCTTTCTAGACCAT
BS21912.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:35:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
VhaAC39-2-RA | 1053 | CG4624-PA | 1..1053 | 17..1069 | 5265 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:35:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
VhaAC39-2-RA | 1233 | CG4624-RA | 71..1132 | 10..1071 | 5280 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:35:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23158554..23159246 | 702..10 | 3435 | 99.7 | Minus |
3R | 32079331 | 3R | 23158118..23158490 | 1071..699 | 1850 | 99.7 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:35:23 has no hits.
BS21912.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-18 12:09:29 Download gff for
BS21912.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
VhaAC39-2-RA | 78..1130 | 17..1069 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:38:05 Download gff for
BS21912.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
VhaAC39-2-RA | 78..1130 | 17..1069 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:56:11 Download gff for
BS21912.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
VhaAC39-2-RA | 78..1130 | 17..1069 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:56:11 Download gff for
BS21912.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23158120..23158486 | 703..1069 | 100 | <- | Minus |
3R | 23158554..23159239 | 17..702 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:38:05 Download gff for
BS21912.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18983842..18984208 | 703..1069 | 100 | <- | Minus |
arm_3R | 18984276..18984961 | 17..702 | 100 | | Minus |
BS21912.pep Sequence
Translation from 16 to 1068
> BS21912.pep
MSMIFNTEYGYLEALTRGFKNGMLKHSDYLNLTQCESLEDVMISIQGTDY
GLIFGGEQSAPSVEVIERCLRDRLLQQYYYIRSHSTEPLTTFMEFIRYPF
MIDNVALLVAGLNNHRSMKRLLRMCHPLGEFDQLGAIEVASNSAELFDAV
LIDTPIARFVPRDLPMESLRYLDVEIVRAHLYRAYLEKFYAYCSQLGGNT
ANVMTNLLSFEADRRTITIAVNAIGSDIIPKERLKMFPTCGYLPKIALAS
MSTLNDTDKIRDVCNVFDGYGKMFDNLERDSDGMITLEDRFLMMEAKKNV
QTFLQQYHFGIFYSFIKLKQLEVRNIVWISECIAQRQTDRINAFIPIPLD
*
BS21912.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:07:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
VhaAC39-2-PA | 350 | CG4624-PA | 1..350 | 1..350 | 1812 | 100 | Plus |
VhaAC39-1-PA | 350 | CG2934-PA | 7..349 | 4..347 | 863 | 46.2 | Plus |