BS21928.complete Sequence
3101 bp assembled on 2011-02-17
GenBank Submission: KX805058
> BS21928.complete
GAAGTTATCAGTCGACATGTCTGACACCATTGCATCCGAAAAAGAAGGAA
TCTGTCCTCTAAACGAATCAAAGTCAGGTCAGGAAATTGATACACCAGTT
GACCAAGATTCACAGAAATTGGAGCAAGTTATCTTGGACAGCTACATAAC
AGCACCTCTTAAAATCGTTGAGCCCTTCGAGAAGTTCGAAAAGGAAAAGG
AGGAGGAAGACAAAGAGAAGGATAGTCCGGTAAGGAGCTCGACAAGTCCG
GAGGATCTCACCGAGATCGAAGTCATTAGTGCCAAGGCTAAGAAATCGGT
TAGCTTCAATCCCAACGACGAAGAGATTCGAAAGTTCACCACCGGTGAAC
CGATTGTCGATCAAAAGAATCCATTCCGCAATGGTAACATAATAGCAAAT
ACGCGTGAGAAGAAGACACCGCCTCCGGTGCCAACGAAACGATCGACCCT
AAGTGTTCGCAAAACCGTGACCCAGCAACTTAGGGAACGCGAACGAGAAC
GGGAGCGCGAAAAGGAGCGGGAGCAGCAGAAGAACGAGTCCAACACTCGA
AAAAGTAAGATTAATCGAACCCAGACGCAGACGGATGACTTTGTGACCAC
TGAGGAGGTGCTCAAGCAATCCAAGTACGTGAAAACGTACATCAAGAATC
CGGATGCGTACTTTGTCTATGATCCCTCGGTGCTGGCACGCCTTAAGTTA
GAGGAACTCAAGGAGACAACCGGCAAATTGCCCAAGCGGAAACAGACGTT
GAAGGAAACAAGAACGGGAAAACAGGCCCGCCATCAGAATCAGAATCCCA
ACCAGAACCAGAAGGCTCAGCAGTTAATAAAACCGCCGCAGCCCACTTTT
AAGAAGTGCTCGAAGCCAAACTATCCGGAGTTGGCCAACTTAAAAATTCG
AACCGGTACAAATTCGGATCCAGAAAGCAGTGCCTTATTCAATCCCGCTG
AGGTAACGAAAAATGCTCGCAAATTCGATGAGAGGGTAAAGAAACTACAG
ATCACCTCGGATGATGATCTAGACGATATCGATGGACCATTGACGAAAAG
TGAGTCCAGTGACGAGTTGGCGGCCAGTTCCTCTGTGCCACAGAGTCCGG
ACAAGCCGGTGGCTATGAGTGCGCCGGGGGATTTACCCTCGCCATCACCG
GGCACATTCACCAATACCATTAGTTCCGATGAGTTCCAAGCGTATCTGGA
CTCGAAGGGTCTGGCCCTAATGCCCAGGCGGGAGCTATTCTCACCGACAC
CCACAATCGCCAGGACTTCGACGCCAATGCAAACGGCAGAGGAGCGACGG
CAACAGGTGGCTGAATCACTGGCGGCTCTGCGCAAAAGCAACACCAAGAA
GCTAAATGTACTCCAGCGTATCTCAAACAGTATATTTCCAGCTCGACGAA
AAACTACTCCCAAATCGGAAACTCCTTCGCCACGGAGTATTTTCAACGAA
TTGGAAAAGGAGGACTATCGTCGCAAGGCGGATGTCCCAACTGAGATACG
TCGTGTACTATTGGAACGCCAGAGTCCTAATTGTCGTCGGCAAAATGGTC
AAGTTCAATCGCCGACCATTGATTCTGGTATCGATAAAAGTCCCAGAAAT
TGTGAAAGCAATTTGCCGAACAGAAACGGTGATACAAGTTTACAAAGGAG
AAATGGTGACATCAATTTGCAAATGCGAAATGGTGACACCAGTTTGCAGA
TAAGAAACGGTGACAACACAATTTTGCAAAGGCGAAACGGTGACAACAAC
TTGCGAAGATCAACACTGGAGCGACCAGGTGTGAATCCTAGACGTCAGTG
GCCAGAAGCACAGCAGGTGGGTCGAATAAATCGATCCACTTCAGTGGATC
GCAGCCAATTCAATCATGAGCAGCCTGCTCTTGCAAGTCCTGTTGCCTCA
TCGACGCCAGTGCGTGGCCAAAATCAATGGGATCAATTGCGGGCCATCAA
AGAGGTGACGGATCGCCAGCTTTATCACAAGCTTCATCAGCAGCAGCAAC
TGCAGGCACAACCACTCCAGGGACAACAACAACAGCAGCAGCAGCAGCAC
ACAATCAGACAACGACCGAATGAGGATATCTACTCCCAGGTGATAGTCCA
TCCCGACCAAACCAACTTTGTTCGCGGCTCAATGCAGCGTAACACCTTCT
CCGGAATCAGCGGTCGCAGCAGGCCACTAATGGTTTATAATGGTACACCG
ATGAGGCAACAACAAATGCAAAAACAGCCGCCGCGATGTCAGAGTGTCCT
GGACAATATAACGCCAAGTGCTGGAAATCCAGGCCAACAGACACCAGTGG
TAATGCGGCATAGGGTGGCGAACCAGGGCCAATCGCAGCAAATGCCATCA
CGTCGCATCGGTGGACTACTCACGCGCGAGGAGATTCTCGAAAAGGTCAA
GGAGTTTTGCCGCAAGAGCATTAACCGAGCACCGGAAGCCAAGACGCCAC
TGCAGCCCATCTATAAGCGACATCTAACGCCGCCCAACGCCGATGTCTCG
CCCGTGTCATACGCTTCTGTCGATGATCAATGTGCTCGACCACAGGTGCC
ACAGCGTGTCCAGAGTTTACCTGTCGCCCAGGGGCGCTACGTCACCAGCG
GCATGTCAGTGGACGGGCCGTCACCCATTTACGCTCATGTCAGCAAGCGA
AACAGTTTGCTTTCCAATGTCTCCGAACAGTATTTATCCAACCAGCAACT
TGGAACACTGACCAGGCCGGTGCCGCTGAACCAGTTGGTACTGGTGGATA
CGGGCGAGGGTGTTCAGGTGGCCCAGCTAGTAGACTATCTACCCTATGTC
CGACCGGCTCCCGCCCAGGGCTATATGATGCAGGATGGCAGGGCCACTCC
ACTCATCCTGGACCAATCGGCCCAGCAGAGCAGCCAAATTTACTGGACAC
CGCAGCATCGTCAGCGTTTCTCTCATCCGGTGCCGGCACCCCGTTTTATG
AAGAGTCAAGCCATGCCCACATCAAGAAACAGCACCATAAGTCGACATAT
GGAGGAAAGGATGGGTAACGCCTCCGACTGGGAACTCAGCTCGGAAGCTG
GTGAAGTGAGGCGTATAATGGAAAAACAATTATAAAAGCTTTCTAGACCA
T
BS21928.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:54:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42353-RB | 3069 | CG42353-PB | 1..3069 | 17..3085 | 15345 | 100 | Plus |
| CG42353-RA | 3069 | CG42353-PA | 1..3069 | 17..3085 | 15345 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:54:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42354-RC | 6153 | CG42354-RC | 510..3578 | 17..3085 | 15345 | 100 | Plus |
| CG42354-RB | 5918 | CG42354-RB | 275..3343 | 17..3085 | 15345 | 100 | Plus |
| CG42353-RB | 6153 | CG42353-RB | 510..3578 | 17..3085 | 15345 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:54:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16097703..16100218 | 2532..17 | 12580 | 100 | Minus |
| X | 23542271 | X | 16097020..16097573 | 3085..2532 | 2770 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:54:16 has no hits.
BS21928.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-17 10:42:10 Download gff for
BS21928.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42353-RA | 241..3307 | 17..3083 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:27:22 Download gff for
BS21928.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42353-RB | 476..3542 | 17..3083 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:07:00 Download gff for
BS21928.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42353-RB | 510..3576 | 17..3083 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:07:00 Download gff for
BS21928.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16097022..16097572 | 2533..3083 | 100 | <- | Minus |
| X | 16097703..16100218 | 17..2532 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:27:22 Download gff for
BS21928.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15991055..15991605 | 2533..3083 | 100 | <- | Minus |
| arm_X | 15991736..15994251 | 17..2532 | 100 | | Minus |
BS21928.pep Sequence
Translation from 16 to 3084
> BS21928.pep
MSDTIASEKEGICPLNESKSGQEIDTPVDQDSQKLEQVILDSYITAPLKI
VEPFEKFEKEKEEEDKEKDSPVRSSTSPEDLTEIEVISAKAKKSVSFNPN
DEEIRKFTTGEPIVDQKNPFRNGNIIANTREKKTPPPVPTKRSTLSVRKT
VTQQLREREREREREKEREQQKNESNTRKSKINRTQTQTDDFVTTEEVLK
QSKYVKTYIKNPDAYFVYDPSVLARLKLEELKETTGKLPKRKQTLKETRT
GKQARHQNQNPNQNQKAQQLIKPPQPTFKKCSKPNYPELANLKIRTGTNS
DPESSALFNPAEVTKNARKFDERVKKLQITSDDDLDDIDGPLTKSESSDE
LAASSSVPQSPDKPVAMSAPGDLPSPSPGTFTNTISSDEFQAYLDSKGLA
LMPRRELFSPTPTIARTSTPMQTAEERRQQVAESLAALRKSNTKKLNVLQ
RISNSIFPARRKTTPKSETPSPRSIFNELEKEDYRRKADVPTEIRRVLLE
RQSPNCRRQNGQVQSPTIDSGIDKSPRNCESNLPNRNGDTSLQRRNGDIN
LQMRNGDTSLQIRNGDNTILQRRNGDNNLRRSTLERPGVNPRRQWPEAQQ
VGRINRSTSVDRSQFNHEQPALASPVASSTPVRGQNQWDQLRAIKEVTDR
QLYHKLHQQQQLQAQPLQGQQQQQQQQHTIRQRPNEDIYSQVIVHPDQTN
FVRGSMQRNTFSGISGRSRPLMVYNGTPMRQQQMQKQPPRCQSVLDNITP
SAGNPGQQTPVVMRHRVANQGQSQQMPSRRIGGLLTREEILEKVKEFCRK
SINRAPEAKTPLQPIYKRHLTPPNADVSPVSYASVDDQCARPQVPQRVQS
LPVAQGRYVTSGMSVDGPSPIYAHVSKRNSLLSNVSEQYLSNQQLGTLTR
PVPLNQLVLVDTGEGVQVAQLVDYLPYVRPAPAQGYMMQDGRATPLILDQ
SAQQSSQIYWTPQHRQRFSHPVPAPRFMKSQAMPTSRNSTISRHMEERMG
NASDWELSSEAGEVRRIMEKQL*
BS21928.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:21:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42353-PB | 1022 | CG42353-PB | 1..1022 | 1..1022 | 5262 | 100 | Plus |
| CG42353-PA | 1022 | CG42353-PA | 1..1022 | 1..1022 | 5262 | 100 | Plus |
