BS21931.complete Sequence
1805 bp assembled on 2011-02-17
GenBank Submission: KX801457
> BS21931.complete
GAAGTTATCAGTCGACATGGCAGAACCAATAGAAGGCGAACAGGAGGAAA
AGCCTCCGCCATCGAGGGCAAAGCGAATCACCTATCTGGTACTCCATGTG
CTGCTCCATATCATATTCATATCTTACTTTACGGCAGCCACAATCATTTT
CATCTTTTACGACAAGGATTCCAAAGAATGCTGGCCCAATAGGGGCTCGG
AAGCCACAACCGAATCGATAGATAACTCAACCGAAGATGATGATGATGAT
GATTATGACACAGAAGAAACTTCTGAGAAGCCAGTGCCAGAGGTTAAGCC
AAAACTATTGTGCCAAATTAACTGGTGTCATGGATACGGGTTTCTCATCG
TCTTGTTCATCTTGTTTTATATCCTATGGCTGTACTACTGGGTATTTAAG
CCATTCGTGGGCATCAAGCTGTATAATAACTACCTGGAACCAGTGATTGA
CAAATGGATTGCGTTTAGTCGCCAGTGGATAGTGTCCGGCGTAATGCTGG
CGATTGTGCTCGCTGTGGTGGTGGCATACCTCGGATTCGAGTGCCGCAAT
GACGCATACAAGGCCATCGGACTGCTCGGACCTGTGTGCTTTGTCCTTAT
CGGATTCGCCGTGTCCAAGCACCACTTGCAAGTACCTTGGCGCATAGTGA
CCCACGGTCTCCTGGGACAGCTGCTGCTGGGCATACTCTGCCTGCGCCTC
CCCTTTGGCCGGTCCATCTTTCAATGCCTTGGGGACAAGGTGACGATATT
TCTGAACTACGCACAGCACGGAGCACGCTTTGTGTACGGGGATCGCATTT
GCGATGAGTACGTCTTTGCATTTGCCATACTGGCGGTGGTGTTCTTCTTC
AGCGTGATCACCAGCATTATGTATTACCTTGGCTGGATGCAGTTCATCCT
GAACGGTTTTGGGTTCCTCTTGCAGGCCATGGTGGGCACCACCGTTTGCG
AAAGTGTAAATGCAGCGGGCAACGTGTTTCTAAGCATGACCGAGAGCCCT
CTGGTCATCCGGCCGTACATCGAAATACTGACCGTCAGCGAGTTGCACGC
TATATGCACCTCCGGCTACGCGACAGTGGCCGGTACTGTCTTGGGGGCTT
ATGTGTCCTTCGGTGCTTCCGCCAGCTTTCTTATCGCAGCCAGCGTAATG
GCTGCTCCGGGTTCACTGGCTTTCGCCAAACTGTTCTACCCCGAGACCGA
GGAATCTCTGACCAGGTCCGACAACATTAAGCTGGAAAGCTCGACGGATA
CGTCTATTTTGGATGCGGCCGCCTCGGGAGCTGCAGCAGCCTTGTTGATT
GTGCTCGGAATCGTCTCGAATATCATCGCCTTCCTAGCCATTGTGTTCTT
CCTAGACGCTGTAACGGAGTGGATTTTCGAGCTAATTGGACTGCATAACA
TCACCCTACTCTACATTCTCTCCCAGATCTTTATCCCGATTGTCTTCGTG
ATGGGCGTGCCGTGGCACGATTGTCAAGCAATTGGCCTGGTGGTGGCCCA
AAAGTCGTTCATAAACGAGTTTGTGGCTTATAGAAACCTGGGCATATTGG
TTAGCGATAAAAAGGTTGATCCGCGGAGCGCTGCCATAGCCACTTTTGCC
CTTTGTGGGTTTGCCAATCCCGGATCCCTGGGCATTGTCATCGCTTCGCT
GAGTGCAATGGCACCATCCCGACGATCAGACATCACCAGGGTAGCCTTTC
GATCCTATTTCGCAGGCAGTTTCGTTAGCTTTACATCCGCTTCGCTTGCA
GGGATTCTTATTCAAAATGAGTACACAGGTGGTAATTAAAAGCTTTCTAG
ACCAT
BS21931.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:51:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CNT1-RB | 1773 | CG11778-PB | 1..1773 | 17..1789 | 8865 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:51:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CNT1-RB | 2819 | CG11778-RB | 80..1852 | 17..1789 | 8865 | 100 | Plus |
| CG13742-RE | 2339 | CG13742-RE | 2238..2277 | 1789..1750 | 200 | 100 | Minus |
| CG13742-RD | 2279 | CG13742-RD | 2178..2217 | 1789..1750 | 200 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:51:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9083211..9083977 | 477..1243 | 3835 | 100 | Plus |
| 2R | 25286936 | 2R | 9084033..9084360 | 1243..1570 | 1640 | 100 | Plus |
| 2R | 25286936 | 2R | 9082669..9082986 | 161..478 | 1590 | 100 | Plus |
| 2R | 25286936 | 2R | 9084421..9084602 | 1571..1752 | 910 | 100 | Plus |
| 2R | 25286936 | 2R | 9082474..9082618 | 17..161 | 725 | 100 | Plus |
| 2R | 25286936 | 2R | 9084660..9084699 | 1750..1789 | 200 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:51:33 has no hits.
BS21931.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-17 10:42:09 Download gff for
BS21931.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11778-RB | 38..1808 | 17..1787 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:27:02 Download gff for
BS21931.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CNT1-RB | 80..1850 | 17..1787 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:06:06 Download gff for
BS21931.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CNT1-RB | 80..1850 | 17..1787 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:06:06 Download gff for
BS21931.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9082670..9082985 | 162..477 | 100 | -> | Plus |
| 2R | 9082474..9082618 | 17..161 | 100 | -> | Plus |
| 2R | 9083212..9083976 | 478..1242 | 100 | -> | Plus |
| 2R | 9084033..9084360 | 1243..1570 | 100 | -> | Plus |
| 2R | 9084421..9084601 | 1571..1751 | 100 | -> | Plus |
| 2R | 9084662..9084697 | 1752..1787 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:27:02 Download gff for
BS21931.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4969979..4970123 | 17..161 | 100 | -> | Plus |
| arm_2R | 4970175..4970490 | 162..477 | 100 | -> | Plus |
| arm_2R | 4970717..4971481 | 478..1242 | 100 | -> | Plus |
| arm_2R | 4971538..4971865 | 1243..1570 | 100 | -> | Plus |
| arm_2R | 4971926..4972106 | 1571..1751 | 100 | -> | Plus |
| arm_2R | 4972167..4972202 | 1752..1787 | 100 | | Plus |
BS21931.pep Sequence
Translation from 16 to 1788
> BS21931.pep
MAEPIEGEQEEKPPPSRAKRITYLVLHVLLHIIFISYFTAATIIFIFYDK
DSKECWPNRGSEATTESIDNSTEDDDDDDYDTEETSEKPVPEVKPKLLCQ
INWCHGYGFLIVLFILFYILWLYYWVFKPFVGIKLYNNYLEPVIDKWIAF
SRQWIVSGVMLAIVLAVVVAYLGFECRNDAYKAIGLLGPVCFVLIGFAVS
KHHLQVPWRIVTHGLLGQLLLGILCLRLPFGRSIFQCLGDKVTIFLNYAQ
HGARFVYGDRICDEYVFAFAILAVVFFFSVITSIMYYLGWMQFILNGFGF
LLQAMVGTTVCESVNAAGNVFLSMTESPLVIRPYIEILTVSELHAICTSG
YATVAGTVLGAYVSFGASASFLIAASVMAAPGSLAFAKLFYPETEESLTR
SDNIKLESSTDTSILDAAASGAAAALLIVLGIVSNIIAFLAIVFFLDAVT
EWIFELIGLHNITLLYILSQIFIPIVFVMGVPWHDCQAIGLVVAQKSFIN
EFVAYRNLGILVSDKKVDPRSAAIATFALCGFANPGSLGIVIASLSAMAP
SRRSDITRVAFRSYFAGSFVSFTSASLAGILIQNEYTGGN*
BS21931.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:21:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CNT1-PB | 590 | CG11778-PB | 1..590 | 1..590 | 3035 | 100 | Plus |
| CG8083-PB | 602 | CG8083-PB | 43..581 | 6..585 | 1398 | 49.5 | Plus |
| CG8083-PC | 603 | CG8083-PC | 44..582 | 6..585 | 1398 | 49.5 | Plus |
| CG8083-PA | 603 | CG8083-PA | 44..582 | 6..585 | 1398 | 49.5 | Plus |
