BS21937.complete Sequence
1595 bp assembled on 2011-02-17
GenBank Submission: KX800268
> BS21937.complete
GAAGTTATCAGTCGACATGAGTCACAATGGGGCTGGTTTGGGAGCCGGAT
CCGGCGGATCGCCCATCCCGCCAACCACGGTCATGTATTCCCAATTGCAG
CCATGGAGCCAGGCGGGCGCTCCGCCCTGCATGGAGCCCGTCATGGGGCC
TTCGATCCCGCCGAGAGTTGGCGCCGCCTACGAGACGCCCACGAAGCACC
CGTGGCGCCCTGCTATGGCCTATGAGCTAATCCAGGTGAAGCATATGCCC
GAGCAGCCGGTGACCAACCAGCTGACCAAGCAGTGCTTCCTGCCCAAGGG
CATGAAGACGGACGGCATGATATTCCCCAACTTGGTCACCGGGTTCGATC
GCAATCCACAGCACGCCGCCCGGGCTGCCCTCTACACGCGGTACACCAGC
AACGAGTGGTACAACAACAACATGACCAAGTACTCCGAGTCGAACATGAA
TCGCAACCTCTCGGAGCGCATGCGGAATGACGCAGTGCGTCTGATGCGGG
AGACGGACGAGAAGGCCACCTCGGGCCAGAGGGACGCCGGCCGAAGGCTG
GGCGAGCGCATCACCGACCTGACCTTCTGGCGCAACGAGCTGAACGCGGA
GCTGGAGAAGCTGATCGCCGAGATGTCGGACATCAACGAGCTGCAGCGGC
AGTGCGGCAAGGCACTTCTCGACCTGGAGATACCACTGCACATCGCCCAG
GAGTGCCTCTTTCACCGAGAGTCGCGCCAGGGCACGGAGAAGGTGCATGA
CATCGTGGAGAAGGCCCTCCTCGTTGAGATCAACAACTTGAGGAACTCCC
GTGACCGGCTAGGCGGCCTGCACGAGAAGATCTCGAAGCAGGCCCTCGAC
TGCCGCGGCGCCCAGCATCTCCTCGAGGACGATGTGTCGCACAAGGAGTC
CTCGCTCGGCATCGACTCCATGTGCCACCAGCTGAACAACCACAGCCGCG
GCATCACCTACTACGGCGGCATCGAGAAGTTCGATCCCTCGGTCAGCACC
CAGGAGTCCTGGGCGCAGGCCAGCAGCGAGCACGTCCGCCGTTCCCAGGC
GGAGCGCGCGAAGCTTTCCCAGCTGCGGAGCGATGCCCAGAGTGTGGTCA
ACTCGGTGGCCACCACCGTGTGGGACTTCTGGAGCAACACGAACAACGCC
TTCGATCGCCGCTCGCAGGAGATGGCCGAGGCGAAGAACCGGGTGCAGCT
GCACCTTCAGAAGGTCCAACAGGAGCTGTTCGACATGGAGAAGCATCTCT
TCCTCCTGCAGAAGGCCATCCAGGACAAGTCCGGGCCGTTGAAAGTGGCC
CAGACGCGGCTGGAGGCCCGCTCCCACCGCGAGGGCGTCGAGCTGTGCAA
GGACCACGCCCAGGACCGCCTTGTCCAGGAGGTGCAGGACATCCAGGGTG
CAGTGGAGACGCTGCACCACAAGCTGATGGAGGCGGAGGCCACCCATCAG
GGCCTACTAAAGACGCGCTGCACCCTGGAGGTGGATCTGCGCAACAAAGT
CAATGCCCTGTTCATCGACCGAGAGAAGTGCATGAGTCTCCGGCGCTCCT
TCCCGGTCAGCAATCTGATCAAGTACTGAAAGCTTTCTAGACCAT
BS21937.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:49:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17450-RC | 1563 | CG17450-PC | 1..1563 | 17..1579 | 7815 | 100 | Plus |
| CG17450-RA | 1563 | CG17450-PA | 1..1563 | 17..1579 | 7815 | 100 | Plus |
| CG32820-RB | 1563 | CG32820-PB | 1..1563 | 17..1579 | 7785 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:49:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17450-RC | 1922 | CG17450-RC | 149..1711 | 17..1579 | 7815 | 100 | Plus |
| CG17450-RA | 1838 | CG17450-RA | 149..1711 | 17..1579 | 7815 | 100 | Plus |
| CG32820-RB | 2034 | CG32820-RB | 149..1711 | 17..1579 | 7785 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:49:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 21606796..21607384 | 1041..453 | 2945 | 100 | Minus |
| X | 23542271 | X | 21612888..21613476 | 1041..453 | 2945 | 100 | Minus |
| X | 23542271 | X | 21618980..21619568 | 1041..453 | 2945 | 100 | Minus |
| X | 23542271 | X | 21606095..21606633 | 1579..1041 | 2695 | 100 | Minus |
| X | 23542271 | X | 21612190..21612728 | 1579..1041 | 2665 | 99.6 | Minus |
| X | 23542271 | X | 21618282..21618820 | 1579..1041 | 2665 | 99.6 | Minus |
| X | 23542271 | X | 21607507..21607943 | 453..17 | 2185 | 100 | Minus |
| X | 23542271 | X | 21613599..21614035 | 453..17 | 2185 | 100 | Minus |
| X | 23542271 | X | 21619691..21620127 | 453..17 | 2185 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 12:49:44 has no hits.
BS21937.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-17 13:27:01 Download gff for
BS21937.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17450-RA | 145..1706 | 17..1578 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:46:15 Download gff for
BS21937.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17450-RA | 149..1710 | 17..1578 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:05:35 Download gff for
BS21937.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17450-RA | 149..1710 | 17..1578 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:05:35 Download gff for
BS21937.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 21606096..21606632 | 1042..1578 | 100 | <- | Minus |
| X | 21606796..21607383 | 454..1041 | 100 | <- | Minus |
| X | 21607507..21607943 | 17..453 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:46:15 Download gff for
BS21937.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 21477123..21477659 | 1042..1578 | 100 | <- | Minus |
| arm_X | 21477823..21478410 | 454..1041 | 100 | <- | Minus |
| arm_X | 21478534..21478970 | 17..453 | 100 | | Minus |
BS21937.pep Sequence
Translation from 16 to 1578
> BS21937.pep
MSHNGAGLGAGSGGSPIPPTTVMYSQLQPWSQAGAPPCMEPVMGPSIPPR
VGAAYETPTKHPWRPAMAYELIQVKHMPEQPVTNQLTKQCFLPKGMKTDG
MIFPNLVTGFDRNPQHAARAALYTRYTSNEWYNNNMTKYSESNMNRNLSE
RMRNDAVRLMRETDEKATSGQRDAGRRLGERITDLTFWRNELNAELEKLI
AEMSDINELQRQCGKALLDLEIPLHIAQECLFHRESRQGTEKVHDIVEKA
LLVEINNLRNSRDRLGGLHEKISKQALDCRGAQHLLEDDVSHKESSLGID
SMCHQLNNHSRGITYYGGIEKFDPSVSTQESWAQASSEHVRRSQAERAKL
SQLRSDAQSVVNSVATTVWDFWSNTNNAFDRRSQEMAEAKNRVQLHLQKV
QQELFDMEKHLFLLQKAIQDKSGPLKVAQTRLEARSHREGVELCKDHAQD
RLVQEVQDIQGAVETLHHKLMEAEATHQGLLKTRCTLEVDLRNKVNALFI
DREKCMSLRRSFPVSNLIKY*
BS21937.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:33:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32820-PB | 520 | CG32820-PB | 1..520 | 1..520 | 2722 | 100 | Plus |
| CG32819-PB | 520 | CG32819-PB | 1..520 | 1..520 | 2722 | 100 | Plus |
| CG17450-PC | 520 | CG17450-PC | 1..520 | 1..520 | 2722 | 100 | Plus |
| CG17450-PA | 520 | CG17450-PA | 1..520 | 1..520 | 2722 | 100 | Plus |
| CG32820-PA | 601 | CG32820-PA | 110..601 | 29..520 | 2574 | 100 | Plus |
