BS21940.complete Sequence
470 bp assembled on 2011-01-25
GenBank Submission: KX803011
> BS21940.complete
GAAGTTATCAGTCGACATGTCAGAAGAAGAAGCCCCAGGATCTCCGGGTG
AGGCTGTTGAAGAAGAAGATACCACTACATCCGATGCTGATACAACCACA
GCTGGTGCCCGCATGATGATGATCCACCCATGGCTGACGGCCGCCGCAGT
GGCCATGTATGCCACCAAGGTCATGTGGGTCAAGTTCCGTGAGATCGGCC
TGGCTAAACAGGAAAAACGGCTCAAAAATCAACTGGCGAAGCAGTCTAAG
CCCTTGCAGACTATTGATGAAGATGTTTCCGAATCTGATGCAGAATATGA
TGCAGAATCTGATGCAGAATCTGATGCAGAATCAGATGCAGAGGACGAAG
ACGTCGTCGGGCCCCAAGTCGAAGATGCAGCAGAGGGACCGGGATTCGAG
CCAAACCGTGTGGATATATGCCATCGCCCGATCGAAGTCTCTACTGACTG
CTGAAAGCTTTCTAGACCAT
BS21940.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:36:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12699-RB | 438 | CG12699-PB | 1..438 | 17..454 | 2190 | 100 | Plus |
CG18469-RA | 387 | CG18469-PA | 100..204 | 107..211 | 225 | 81 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:36:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12699-RB | 766 | CG12699-RB | 74..511 | 17..454 | 2190 | 100 | Plus |
CG18469-RA | 509 | CG18469-RA | 108..212 | 107..211 | 225 | 81 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:36:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17246785..17247222 | 454..17 | 2190 | 100 | Minus |
2R | 25286936 | 2R | 17246066..17246170 | 211..107 | 225 | 81 | Minus |
Blast to na_te.dros performed 2014-11-26 16:36:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
transib2 | 2844 | transib2 TRANSIB2 2844bp | 2535..2571 | 312..276 | 104 | 75.7 | Minus |
BS21940.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:16:28 Download gff for
BS21940.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12699-RB | 74..510 | 17..453 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:01:06 Download gff for
BS21940.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12699-RB | 74..510 | 17..453 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:08:24 Download gff for
BS21940.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12699-RB | 74..510 | 17..453 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:08:24 Download gff for
BS21940.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17246786..17247222 | 17..453 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:01:06 Download gff for
BS21940.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13134291..13134727 | 17..453 | 100 | | Minus |
BS21940.pep Sequence
Translation from 16 to 453
> BS21940.pep
MSEEEAPGSPGEAVEEEDTTTSDADTTTAGARMMMIHPWLTAAAVAMYAT
KVMWVKFREIGLAKQEKRLKNQLAKQSKPLQTIDEDVSESDAEYDAESDA
ESDAESDAEDEDVVGPQVEDAAEGPGFEPNRVDICHRPIEVSTDC*
BS21940.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:08:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12699-PB | 145 | CG12699-PB | 1..145 | 1..145 | 748 | 100 | Plus |
CG18469-PA | 128 | CG18469-PA | 1..116 | 1..119 | 229 | 45.9 | Plus |