Clone BS21940 Report

Search the DGRC for BS21940

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:219
Well:40
Vector:pDNR-Dual
Associated Gene/TranscriptCG12699-RB
Protein status:BS21940.pep: full length peptide match
Sequenced Size:470

Clone Sequence Records

BS21940.complete Sequence

470 bp assembled on 2011-01-25

GenBank Submission: KX803011

> BS21940.complete
GAAGTTATCAGTCGACATGTCAGAAGAAGAAGCCCCAGGATCTCCGGGTG
AGGCTGTTGAAGAAGAAGATACCACTACATCCGATGCTGATACAACCACA
GCTGGTGCCCGCATGATGATGATCCACCCATGGCTGACGGCCGCCGCAGT
GGCCATGTATGCCACCAAGGTCATGTGGGTCAAGTTCCGTGAGATCGGCC
TGGCTAAACAGGAAAAACGGCTCAAAAATCAACTGGCGAAGCAGTCTAAG
CCCTTGCAGACTATTGATGAAGATGTTTCCGAATCTGATGCAGAATATGA
TGCAGAATCTGATGCAGAATCTGATGCAGAATCAGATGCAGAGGACGAAG
ACGTCGTCGGGCCCCAAGTCGAAGATGCAGCAGAGGGACCGGGATTCGAG
CCAAACCGTGTGGATATATGCCATCGCCCGATCGAAGTCTCTACTGACTG
CTGAAAGCTTTCTAGACCAT

BS21940.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:36:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG12699-RB 438 CG12699-PB 1..438 17..454 2190 100 Plus
CG18469-RA 387 CG18469-PA 100..204 107..211 225 81 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:36:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG12699-RB 766 CG12699-RB 74..511 17..454 2190 100 Plus
CG18469-RA 509 CG18469-RA 108..212 107..211 225 81 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:36:35
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17246785..17247222 454..17 2190 100 Minus
2R 25286936 2R 17246066..17246170 211..107 225 81 Minus
Blast to na_te.dros performed 2014-11-26 16:36:36
Subject Length Description Subject Range Query Range Score Percent Strand
transib2 2844 transib2 TRANSIB2 2844bp 2535..2571 312..276 104 75.7 Minus

BS21940.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:16:28 Download gff for BS21940.complete
Subject Subject Range Query Range Percent Splice Strand
CG12699-RB 74..510 17..453 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:01:06 Download gff for BS21940.complete
Subject Subject Range Query Range Percent Splice Strand
CG12699-RB 74..510 17..453 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:08:24 Download gff for BS21940.complete
Subject Subject Range Query Range Percent Splice Strand
CG12699-RB 74..510 17..453 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:08:24 Download gff for BS21940.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17246786..17247222 17..453 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:01:06 Download gff for BS21940.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13134291..13134727 17..453 100   Minus

BS21940.pep Sequence

Translation from 16 to 453

> BS21940.pep
MSEEEAPGSPGEAVEEEDTTTSDADTTTAGARMMMIHPWLTAAAVAMYAT
KVMWVKFREIGLAKQEKRLKNQLAKQSKPLQTIDEDVSESDAEYDAESDA
ESDAESDAEDEDVVGPQVEDAAEGPGFEPNRVDICHRPIEVSTDC*

BS21940.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:08:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG12699-PB 145 CG12699-PB 1..145 1..145 748 100 Plus
CG18469-PA 128 CG18469-PA 1..116 1..119 229 45.9 Plus