BS21946.complete Sequence
929 bp assembled on 2011-01-25
GenBank Submission: KX806546
> BS21946.complete
GAAGTTATCAGTCGACATGAACAAGGTCGAGTTCAAAAACAAGAACAAGG
ATCAGGGACCCTGCGCCCGCGTGCGTAAGATTCGTCCAATTAACATGGGC
GGCAACGTGGAGCAGCGTCCTTGGACTCCAACTGTTAGGATCGGCAAGAT
CGCCGCCGAGACCACCAATCCGGGTCCAGCCACTGTCCAACTTCCAACCT
TGATAGGCAGCAAAGTTCCCGACTCCAAGAAGAAGGCCGCACCCTCGTAC
TCCTTTGGCCACAAGTTGGGCGGAAAGTATGACACCTCCGGACCGGGTCC
GGCGCAGTACAATGTTACGGGTATGCGAGCCAAGGGTCGGGATTATCCTC
GAGCAGCCACTCTGCAGAGCAGACCCAAGGAACTAACACGCTTCTCGAAT
CCCGGACCTGGGGAATACGATGTGGTGCCGGCGGCCAAGGCGGTGATCGA
TGCCACGCCCAAATACACTTTTGGCCAACGGCCGGTCGCGTTGAAAACCT
TCCAGATACCAGCTCCTAATGTCTACAAAATACCGACCGTCATGGGCAGC
AGCAAGGAGGGCAAGATTCGTTCGGCTCCGGCTTATACGATTACGGGTCG
GGAGAAGCCTCCGCTGATTCCGGTGATGATCTTCCCCGGACCCGGTTACT
ACGACGGCGAGTACACGGTGGTCAAACCAAAGCCACCAGTCTTCTCCATG
CGCGGCAAGTACAAGATGGGCAGCGAGGACTCGAAGCCCGGACCCGGAGC
GCACTGTCCGGAGAAGTACTGGGAGAAACGTTCGCCTCCTGCCATATCCT
TTGGCATCCTGCACTCCCCCTATATCAAGAAACCATTGCCAGTCAACGTT
CCGCAGCGTTGTGTTCGCTCTTTGTTGGAGAATCGGGCGGACAAGCCCTA
CGATAATATTTGAAAGCTTTCTAGACCAT
BS21946.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:36:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8086-RB | 897 | CG8086-PB | 1..897 | 17..913 | 4485 | 100 | Plus |
| CG8086-RA | 819 | CG8086-PA | 1..819 | 95..913 | 4095 | 100 | Plus |
| CG8086-RK | 786 | CG8086-PK | 1..672 | 95..766 | 3360 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:36:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8086-RB | 1053 | CG8086-RB | 116..1012 | 17..913 | 4485 | 100 | Plus |
| CG8086-RA | 1354 | CG8086-RA | 425..1313 | 25..913 | 4445 | 100 | Plus |
| CG8086-RK | 1508 | CG8086-RK | 425..1166 | 25..766 | 3710 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:36:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8252228..8252536 | 512..204 | 1545 | 100 | Minus |
| 2L | 23513712 | 2L | 8244970..8245226 | 766..510 | 1285 | 100 | Minus |
| 2L | 23513712 | 2L | 8252594..8252777 | 207..24 | 920 | 100 | Minus |
| 2L | 23513712 | 2L | 8244586..8244734 | 913..765 | 745 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:36:22 has no hits.
BS21946.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:16:26 Download gff for
BS21946.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8086-RB | 116..1011 | 17..912 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:00:59 Download gff for
BS21946.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8086-RB | 116..1011 | 17..912 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:08:20 Download gff for
BS21946.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8086-RB | 116..1011 | 17..912 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:08:20 Download gff for
BS21946.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8244970..8245223 | 513..766 | 100 | <- | Minus |
| 2L | 8252228..8252533 | 207..512 | 100 | <- | Minus |
| 2L | 8252595..8252777 | 24..206 | 100 | | Minus |
| 2L | 8244587..8244732 | 767..912 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:00:59 Download gff for
BS21946.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8244970..8245223 | 513..766 | 100 | <- | Minus |
| arm_2L | 8244587..8244732 | 767..912 | 100 | <- | Minus |
| arm_2L | 8252228..8252533 | 207..512 | 100 | <- | Minus |
| arm_2L | 8252595..8252777 | 24..206 | 100 | | Minus |
BS21946.pep Sequence
Translation from 16 to 912
> BS21946.pep
MNKVEFKNKNKDQGPCARVRKIRPINMGGNVEQRPWTPTVRIGKIAAETT
NPGPATVQLPTLIGSKVPDSKKKAAPSYSFGHKLGGKYDTSGPGPAQYNV
TGMRAKGRDYPRAATLQSRPKELTRFSNPGPGEYDVVPAAKAVIDATPKY
TFGQRPVALKTFQIPAPNVYKIPTVMGSSKEGKIRSAPAYTITGREKPPL
IPVMIFPGPGYYDGEYTVVKPKPPVFSMRGKYKMGSEDSKPGPGAHCPEK
YWEKRSPPAISFGILHSPYIKKPLPVNVPQRCVRSLLENRADKPYDNI*
BS21946.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:08:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8086-PB | 298 | CG8086-PB | 1..298 | 1..298 | 1605 | 100 | Plus |
| CG8086-PA | 272 | CG8086-PA | 1..272 | 27..298 | 1465 | 100 | Plus |
| CG8086-PK | 261 | CG8086-PK | 1..243 | 27..270 | 1231 | 95.5 | Plus |
| CG8086-PI | 1603 | CG8086-PI | 1..258 | 1..266 | 963 | 73 | Plus |
| CG8086-PO | 1516 | CG8086-PO | 1..255 | 1..264 | 954 | 75.8 | Plus |
| CG8086-PI | 1603 | CG8086-PI | 283..467 | 76..279 | 190 | 29.9 | Plus |
| CG8086-PI | 1603 | CG8086-PI | 208..432 | 66..275 | 185 | 25.5 | Plus |
| CG8086-PI | 1603 | CG8086-PI | 349..564 | 76..275 | 183 | 29.2 | Plus |
| CG8086-PI | 1603 | CG8086-PI | 712..877 | 76..257 | 181 | 29.7 | Plus |
| CG8086-PI | 1603 | CG8086-PI | 619..828 | 43..275 | 165 | 28.2 | Plus |
| CG8086-PI | 1603 | CG8086-PI | 745..927 | 76..275 | 164 | 29 | Plus |
| CG8086-PI | 1603 | CG8086-PI | 943..1125 | 76..275 | 159 | 28 | Plus |
| CG8086-PI | 1603 | CG8086-PI | 520..729 | 43..275 | 157 | 27.8 | Plus |
