BS21949.complete Sequence
893 bp assembled on 2011-01-25
GenBank Submission: KX805614
> BS21949.complete
GAAGTTATCAGTCGACATGGCATTGCCGAAGAAAATTAAATGTTTTAAGT
ATTTGGTTTACAGTTATGTGGTGCTCCTAGCGCTGACTGGAGCTGCGCAG
ATCTTCCTGGGCACATCCCTGCTCTGGGGTCACTCGGTCTACTATGGAAT
TGTGCAGAACAAGCTGTGGGCTCCGGCCGCGATCCTGCTTTGCCTGGGAC
CCGTCACCTTCATCCTCTGCTGGATGGGCTGCCAGGCCACCAATCAACGC
AAGCGATGCCTGCTGGGAATGTTTGCCGCCCTTTTGGTTGCCTGCATCTG
TGTTCAGTTCATCATCTGCGGCTGGTCGCTGGCCATGAGGGAGAACCTGC
CCACTTCCGTGGAGATCTTCATCGACGACTCCTTTGTCGAGTTCTTAGAC
AAGTTTTCGCGCACCAAGGTGGATAACCTACATCTGTGGAATAGGATGCA
GTCGCAGTTGCAATGCTGCGGCGTCGACGGACCTCTCGATTACCGCCGAC
TTTCGCTGCCCTGGTCCTGCTGCTCGCGCCCGGAGCACGCCTACGAGTCA
GCATGTGATACCCACTACAAGCGCGGATGCCTGGCCGTCGTATCGGAGCA
GATCAGGAACCGCCTGCTGATCACCGCCTTCGGAGCTGCCATCATAGCCA
TATTCCAGAGCCTGGGAATCTTCTGTGCTGTCCACCTGACCATTCTGTTC
GGCAAGAACGACAACACCCATCCCATGAACATGAACCGGAAAAAGAAGCA
GCAGCAGTTCTTGCCCCTGACCATACAGGACAAGAGGCACGACATGCCCT
CGCCCATCAATCTATCCCCTTCAGCACCCGGGCAGCGGGTTTTAAAAACT
GCTCTGCCCTCGGCCATGCACAAATGAAAGCTTTCTAGACCAT
BS21949.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:36:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TM4SF-RC | 879 | CG11303-PC | 1..861 | 17..877 | 4305 | 100 | Plus |
| TM4SF-RA | 861 | CG11303-PA | 1..861 | 17..877 | 4305 | 100 | Plus |
| TM4SF-RB | 186 | CG11303-PB | 1..66 | 17..82 | 330 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:36:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TM4SF-RC | 1768 | CG11303-RC | 697..1557 | 17..877 | 4305 | 100 | Plus |
| TM4SF-RA | 1458 | CG11303-RA | 387..1247 | 17..877 | 4305 | 100 | Plus |
| TM4SF-RB | 2123 | CG11303-RB | 1117..1912 | 82..877 | 3980 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:36:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23880428..23880649 | 656..877 | 1110 | 100 | Plus |
| 2R | 25286936 | 2R | 23880152..23880354 | 456..658 | 1015 | 100 | Plus |
| 2R | 25286936 | 2R | 23879623..23879812 | 82..271 | 950 | 100 | Plus |
| 2R | 25286936 | 2R | 23879874..23880060 | 271..457 | 935 | 100 | Plus |
| 2R | 25286936 | 2R | 23878893..23878958 | 17..82 | 330 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 16:36:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| invader1 | 4032 | invader1 INVADER 4032bp | 3434..3477 | 16..59 | 112 | 72.7 | Plus |
BS21949.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:16:31 Download gff for
BS21949.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TM4SF-RA | 435..1294 | 17..876 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:01:12 Download gff for
BS21949.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TM4SF-RA | 387..1246 | 17..876 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:08:33 Download gff for
BS21949.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TM4SF-RA | 387..1246 | 17..876 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:08:33 Download gff for
BS21949.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23879624..23879812 | 83..271 | 100 | -> | Plus |
| 2R | 23879875..23880060 | 272..457 | 100 | -> | Plus |
| 2R | 23880154..23880354 | 458..658 | 100 | -> | Plus |
| 2R | 23878893..23878958 | 17..82 | 100 | -> | Plus |
| 2R | 23880431..23880648 | 659..876 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:01:12 Download gff for
BS21949.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19766416..19766481 | 17..82 | 100 | -> | Plus |
| arm_2R | 19767147..19767335 | 83..271 | 100 | -> | Plus |
| arm_2R | 19767398..19767583 | 272..457 | 100 | -> | Plus |
| arm_2R | 19767677..19767877 | 458..658 | 100 | -> | Plus |
| arm_2R | 19767954..19768171 | 659..876 | 100 | | Plus |
BS21949.pep Sequence
Translation from 16 to 876
> BS21949.pep
MALPKKIKCFKYLVYSYVVLLALTGAAQIFLGTSLLWGHSVYYGIVQNKL
WAPAAILLCLGPVTFILCWMGCQATNQRKRCLLGMFAALLVACICVQFII
CGWSLAMRENLPTSVEIFIDDSFVEFLDKFSRTKVDNLHLWNRMQSQLQC
CGVDGPLDYRRLSLPWSCCSRPEHAYESACDTHYKRGCLAVVSEQIRNRL
LITAFGAAIIAIFQSLGIFCAVHLTILFGKNDNTHPMNMNRKKKQQQFLP
LTIQDKRHDMPSPINLSPSAPGQRVLKTALPSAMHK*
BS21949.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:08:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TM4SF-PA | 286 | CG11303-PA | 1..286 | 1..286 | 1531 | 100 | Plus |
| TM4SF-PC | 292 | CG11303-PC | 1..286 | 1..286 | 1531 | 100 | Plus |
| Tsp47F-PB | 239 | CG9033-PB | 10..229 | 11..224 | 229 | 27.3 | Plus |
| Tsp39D-PB | 235 | CG8666-PB | 6..221 | 7..221 | 215 | 27.6 | Plus |
| Tsp26A-PC | 277 | CG9093-PC | 18..265 | 9..224 | 186 | 25.6 | Plus |
