BS21952.complete Sequence
701 bp assembled on 2011-01-25
GenBank Submission: KX800578
> BS21952.complete
GAAGTTATCAGTCGACATGAGCTCGAGCAGAACGAGGAACGGCCCCACGC
TTAATTTCAAGGCGGTGCTGCTGGGCGAAGGTTGTGTGGGCAAGACGTCG
CTGGTGCTGCGCTACATGGAAGACCGGTTCAATGCCCAGCACCTAAGCAC
CCTGCAGGCTTCCTTTGTCAGCCGCAAGATGTCCCTGGAGGATGGGAGAA
GGGCGCAGTTGAATATTTGGGACACGGCTGGTCAGGAGCGGTTCCACGCC
CTGGGACCCATCTACTATCGCGGCTCCGATGGCGCCCTGCTCGTCTATGA
CATAACGGACCGAGACTCGTTCCAGAAGGTCAAATCCTGGGTGCGGGAGC
TCCGGCAAATGCGCGGCACGGAGATTGCCTTAATAATCGTCGGCAACAAG
ACTGATTTGGAGGAACAGCGAGCAGTAACGCACGATGAGGCCCTTCAATA
TGCGCGCACGGTTGGCGCTCAATATGTAGAAACTTCGGCCAAGGAGAACG
AGGGGGTGGCTGAGCTCTTCGAGCTCCTGACCCAGCTGATGCTGGAGCAG
TTGAGCCAACGGCAACCGGATGCGAGTCCACTTCGCCTCCAGAATCCGGA
TACGGATAACCTTAACAACTCCGATGACTCGGAGGCCCCGGATCCCGGAG
ATCCTGCGGGCCAGCGGTCCTGTTGCGGCATTTAGAAGCTTTCTAGACCA
T
BS21952.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:09:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab21-RC | 669 | CG17515-PC | 1..669 | 17..685 | 3345 | 100 | Plus |
Rab21-RD | 669 | CG17515-PD | 1..669 | 17..685 | 3345 | 100 | Plus |
Rab21-RA | 570 | CG17515-PA | 1..570 | 116..685 | 2850 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:09:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab21-RC | 1064 | CG17515-RC | 159..827 | 17..685 | 3345 | 100 | Plus |
Rab21-RD | 1050 | CG17515-RD | 145..813 | 17..685 | 3345 | 100 | Plus |
Rab21-RA | 1077 | CG17515-RA | 234..840 | 79..685 | 3035 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:09:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 23012377..23012983 | 685..79 | 3035 | 100 | Minus |
X | 23542271 | X | 23013041..23013106 | 82..17 | 330 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:09:26 has no hits.
BS21952.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:17:05 Download gff for
BS21952.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab21-RC | 154..822 | 17..685 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:48:49 Download gff for
BS21952.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab21-RD | 145..813 | 17..685 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:07:31 Download gff for
BS21952.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab21-RD | 145..813 | 17..685 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:07:31 Download gff for
BS21952.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 23012377..23012981 | 81..685 | 100 | <- | Minus |
X | 23013043..23013106 | 17..80 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:48:49 Download gff for
BS21952.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 22414213..22414817 | 81..685 | 100 | <- | Minus |
arm_X | 22414879..22414942 | 17..80 | 100 | | Minus |
BS21952.pep Sequence
Translation from 16 to 684
> BS21952.pep
MSSSRTRNGPTLNFKAVLLGEGCVGKTSLVLRYMEDRFNAQHLSTLQASF
VSRKMSLEDGRRAQLNIWDTAGQERFHALGPIYYRGSDGALLVYDITDRD
SFQKVKSWVRELRQMRGTEIALIIVGNKTDLEEQRAVTHDEALQYARTVG
AQYVETSAKENEGVAELFELLTQLMLEQLSQRQPDASPLRLQNPDTDNLN
NSDDSEAPDPGDPAGQRSCCGI*
BS21952.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:09:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab21-PC | 222 | CG17515-PC | 1..222 | 1..222 | 1141 | 100 | Plus |
Rab21-PD | 222 | CG17515-PD | 1..222 | 1..222 | 1141 | 100 | Plus |
Rab21-PA | 189 | CG17515-PA | 1..189 | 34..222 | 974 | 100 | Plus |
Rab5-PI | 219 | CG3664-PI | 22..183 | 6..168 | 386 | 46 | Plus |
Rab5-PH | 219 | CG3664-PH | 22..183 | 6..168 | 386 | 46 | Plus |