Clone BS21952 Report

Search the DGRC for BS21952

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:219
Well:52
Vector:pDNR-Dual
Associated Gene/TranscriptRab21-RC
Protein status:BS21952.pep: gold
Sequenced Size:701

Clone Sequence Records

BS21952.complete Sequence

701 bp assembled on 2011-01-25

GenBank Submission: KX800578

> BS21952.complete
GAAGTTATCAGTCGACATGAGCTCGAGCAGAACGAGGAACGGCCCCACGC
TTAATTTCAAGGCGGTGCTGCTGGGCGAAGGTTGTGTGGGCAAGACGTCG
CTGGTGCTGCGCTACATGGAAGACCGGTTCAATGCCCAGCACCTAAGCAC
CCTGCAGGCTTCCTTTGTCAGCCGCAAGATGTCCCTGGAGGATGGGAGAA
GGGCGCAGTTGAATATTTGGGACACGGCTGGTCAGGAGCGGTTCCACGCC
CTGGGACCCATCTACTATCGCGGCTCCGATGGCGCCCTGCTCGTCTATGA
CATAACGGACCGAGACTCGTTCCAGAAGGTCAAATCCTGGGTGCGGGAGC
TCCGGCAAATGCGCGGCACGGAGATTGCCTTAATAATCGTCGGCAACAAG
ACTGATTTGGAGGAACAGCGAGCAGTAACGCACGATGAGGCCCTTCAATA
TGCGCGCACGGTTGGCGCTCAATATGTAGAAACTTCGGCCAAGGAGAACG
AGGGGGTGGCTGAGCTCTTCGAGCTCCTGACCCAGCTGATGCTGGAGCAG
TTGAGCCAACGGCAACCGGATGCGAGTCCACTTCGCCTCCAGAATCCGGA
TACGGATAACCTTAACAACTCCGATGACTCGGAGGCCCCGGATCCCGGAG
ATCCTGCGGGCCAGCGGTCCTGTTGCGGCATTTAGAAGCTTTCTAGACCA
T

BS21952.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:09:28
Subject Length Description Subject Range Query Range Score Percent Strand
Rab21-RC 669 CG17515-PC 1..669 17..685 3345 100 Plus
Rab21-RD 669 CG17515-PD 1..669 17..685 3345 100 Plus
Rab21-RA 570 CG17515-PA 1..570 116..685 2850 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:09:29
Subject Length Description Subject Range Query Range Score Percent Strand
Rab21-RC 1064 CG17515-RC 159..827 17..685 3345 100 Plus
Rab21-RD 1050 CG17515-RD 145..813 17..685 3345 100 Plus
Rab21-RA 1077 CG17515-RA 234..840 79..685 3035 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:09:25
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 23012377..23012983 685..79 3035 100 Minus
X 23542271 X 23013041..23013106 82..17 330 100 Minus
Blast to na_te.dros performed on 2014-11-26 15:09:26 has no hits.

BS21952.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:17:05 Download gff for BS21952.complete
Subject Subject Range Query Range Percent Splice Strand
Rab21-RC 154..822 17..685 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:48:49 Download gff for BS21952.complete
Subject Subject Range Query Range Percent Splice Strand
Rab21-RD 145..813 17..685 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:07:31 Download gff for BS21952.complete
Subject Subject Range Query Range Percent Splice Strand
Rab21-RD 145..813 17..685 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:07:31 Download gff for BS21952.complete
Subject Subject Range Query Range Percent Splice Strand
X 23012377..23012981 81..685 100 <- Minus
X 23013043..23013106 17..80 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:48:49 Download gff for BS21952.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 22414213..22414817 81..685 100 <- Minus
arm_X 22414879..22414942 17..80 100   Minus

BS21952.pep Sequence

Translation from 16 to 684

> BS21952.pep
MSSSRTRNGPTLNFKAVLLGEGCVGKTSLVLRYMEDRFNAQHLSTLQASF
VSRKMSLEDGRRAQLNIWDTAGQERFHALGPIYYRGSDGALLVYDITDRD
SFQKVKSWVRELRQMRGTEIALIIVGNKTDLEEQRAVTHDEALQYARTVG
AQYVETSAKENEGVAELFELLTQLMLEQLSQRQPDASPLRLQNPDTDNLN
NSDDSEAPDPGDPAGQRSCCGI*

BS21952.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:09:52
Subject Length Description Subject Range Query Range Score Percent Strand
Rab21-PC 222 CG17515-PC 1..222 1..222 1141 100 Plus
Rab21-PD 222 CG17515-PD 1..222 1..222 1141 100 Plus
Rab21-PA 189 CG17515-PA 1..189 34..222 974 100 Plus
Rab5-PI 219 CG3664-PI 22..183 6..168 386 46 Plus
Rab5-PH 219 CG3664-PH 22..183 6..168 386 46 Plus