BS21954.complete Sequence
2264 bp assembled on 2011-03-18
GenBank Submission: KX803251
> BS21954.complete
GAAGTTATCAGTCGACATGGACGTGGAGGATTCCGTGGCGAGCGGAGCGG
CATCCGCCTGCAAGCGCCAAAAGCGAAACACAGATTCCCAGAACGATGGC
GAGCCTGAAGACGCGGCGCAGATTGGTGAGGAGAACACTGTCGCCGAAAG
CCAGCCTTTAATTAACTTCGACACAATTGTCACTCACAACAATAACGGAG
AGAGCGATATGGAGGGCAAGGAAAACCAGCTCCAGGATGAGAGCGAGCAG
TCCGAGGAGCATCTTGCTAATAAAGTTGGACCTGAGGAGCTGCCGGAAAT
AGAACAGGCAGGCTCCTCCAATTTAGCGCATCAATTATCCCCGGAAGCAG
CCTCCACCGTGCTGGCTTCTGATGAGCCAGATGCTTCCACCGGTGTCATC
GAGCCTAGCGACAGCGAAGACTATCCACCTACTTCACCGACGCCAATTGA
AGCTTCCGAAGCGGTCAGTTCACCCCGCTTCAATCCACGCAACATACCAC
CCACGCGCTCCTATCGCCGTATCAGCATAGAGCTAGTGGGCTCCTACTCG
GACACAAGCGATTCAGAAGAACATGAGCTGGAGGAGGGGACCGAGCACGC
AGAAGAGTACAGCGATGATGCGCCTGAACCGCATATAGCCGAGTCCGCTG
ACGACAGTTCCTCCAACGACGACATGGGACCCTATTCTCTTTCCAGTGAA
GATGAAACAACCACAGAGGACGAGGTGGAGTTTAACGAGGACATCAACCC
CGCTGACCGCGAGAAAGTAGACTACGCCGTTAATCAGGTGATGTGCAAGT
GCAAGCCCAAATACACTTGGAACTACGATCAGGAGCTGTTGCAAAGGGAG
CACAACATAATCAACCGGATTGACTGGCGTGGCGGCCACACTTCGGCCTC
TAGCTTCGGCCAGGGCTACTACGGTTCCCGCCAAGTTGTGGAACAAATGA
CGCTGCTCAGTTCGCTAAACGTCCACCACGGCTGCGTCAACTCCCTGAAC
TTCAATCGGGCAGGCGACTTGATTTGCTCCGGCTCCGATGATCTCACCAT
CGTCGTCTGGGATTGGGCGAAAGAAAAGCAGCTGCACCGCTTTCGTTCCG
GCCACAACATGAACATATTCCAGACAAAGTTTATTGACAGCGCCGGCTGC
TTGGACATCGTGTCCTCCAGCCGTGATGGCCAGGTGCGCCGGTCCGTCAT
TCCGCCCTCCGGAGGCGTCATAAAGCCCATCCGTCTGTACACACACAGCG
AGTCCGTTCACAAGATCATCGTGGTGCCCCACAGCCGCCACGAGCTGATG
AGCGCCGGCGAGGATGCAGCTGTTAAGCACTTTGATTTGCGAGCCAGCAA
CGCTGCCACCACGATGATGCGTTGCGTGTACAACGACGAAAATGAGCGTG
GCCGGGTGCGCCTATTCAGCATCGCTCATCATCCTTACGCGCCCGAGTTC
TGCGTCAGTGGATCCGACGACATTTTGCGCGTCTACGACAAGCGCAACCT
AGCGAAGGCAATCCACCAGATGGCCCCTAGGAATTTGCTCGAAGCCCAGA
TCACGCAAATTACTTGCGCTGTGTATAACCACAGCGGCAGCGAAATCCTA
GCCTCATACAGCGATGCGGGTATTTACCTGTTCGACAGTCGGAACTACAA
CAGAGGCGACTATTTGCACTGCTATAAGGGTCACATCAACAGCCGCACCA
TAAAGGGTGTGAACTTCTTTGGACCCAGATCGGAGTATATAGTAAGCGGC
AGCGACTGCGGAAATATATTCTTCTGGGATAAAAACACGGAGGCGATTAT
CAACTACATGAAGGGCGACCACGTCGGCGTAGTCAACTGTCTGGAACCGC
ATCCCTGGATGCCGGTGCTGGCCACCTCTGGACTAGAGCACGACGTCAAG
ATCTGGACACCACAGGGACCTGAAAGGAAACTCCCCGAGGATTTACTGAA
GCAGACGCTGCAGCGCAATTTCAGGTGCAACATTGTGGAGAGTATTGACC
TCGACATCAACAATTTCCAGTACTTTATACGCGGCTTCCTGCAGGGCTCC
GGAGCATCGCATCTGCGTCAGAGACATACGTCTTCGCTAGGTCATCAAAT
GCGGGACAACAGCTCCAGCCGCAGCAACGGCTCGAATGCTTCCAACCCGA
CTTCCCACCGGCGCAACAGCAACAGCTCCGACGACACAAACGACGAGGGA
GCAGACGCCGACGCTGCGCTGGACACGCTGCACTGCCGCACGCAGTAAAA
GCTTTCTAGACCAT
BS21954.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:33:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8001-RD | 2232 | CG8001-PD | 1..2232 | 17..2248 | 11160 | 100 | Plus |
| CG8001-RB | 2232 | CG8001-PB | 1..2232 | 17..2248 | 11160 | 100 | Plus |
| CG8001-RC | 2247 | CG8001-PC | 1..2247 | 17..2248 | 10975 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:33:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8001-RD | 2525 | CG8001-RD | 122..2353 | 17..2248 | 11160 | 100 | Plus |
| CG8001-RB | 2672 | CG8001-RB | 269..2500 | 17..2248 | 11160 | 100 | Plus |
| CG8001-RC | 2540 | CG8001-RC | 122..2368 | 17..2248 | 10975 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:33:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1757320..1758147 | 717..1544 | 4140 | 100 | Plus |
| 3L | 28110227 | 3L | 1756611..1757204 | 126..719 | 2970 | 100 | Plus |
| 3L | 28110227 | 3L | 1758715..1759036 | 1927..2248 | 1610 | 100 | Plus |
| 3L | 28110227 | 3L | 1758409..1758654 | 1682..1927 | 1215 | 99.6 | Plus |
| 3L | 28110227 | 3L | 1758207..1758349 | 1544..1686 | 715 | 100 | Plus |
| 3L | 28110227 | 3L | 1756427..1756536 | 17..126 | 550 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 14:33:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ivk | 5402 | Ivk IVK 5402bp | 3808..3843 | 1684..1719 | 117 | 80.6 | Plus |
BS21954.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-18 10:12:00 Download gff for
BS21954.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8001-RB | 269..2498 | 17..2246 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:37:25 Download gff for
BS21954.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8001-RB | 269..2498 | 17..2246 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:55:34 Download gff for
BS21954.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8001-RB | 269..2498 | 17..2246 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:55:34 Download gff for
BS21954.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1756427..1756536 | 17..126 | 100 | -> | Plus |
| 3L | 1756612..1757203 | 127..718 | 100 | -> | Plus |
| 3L | 1757322..1758146 | 719..1543 | 100 | -> | Plus |
| 3L | 1758207..1758349 | 1544..1686 | 100 | -> | Plus |
| 3L | 1758716..1759034 | 1928..2246 | 100 | | Plus |
| 3L | 1758414..1758654 | 1687..1927 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:37:25 Download gff for
BS21954.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1756427..1756536 | 17..126 | 100 | -> | Plus |
| arm_3L | 1756612..1757203 | 127..718 | 100 | -> | Plus |
| arm_3L | 1757322..1758146 | 719..1543 | 100 | -> | Plus |
| arm_3L | 1758207..1758349 | 1544..1686 | 100 | -> | Plus |
| arm_3L | 1758414..1758654 | 1687..1927 | 100 | -> | Plus |
| arm_3L | 1758716..1759034 | 1928..2246 | 100 | | Plus |
BS21954.pep Sequence
Translation from 16 to 2247
> BS21954.pep
MDVEDSVASGAASACKRQKRNTDSQNDGEPEDAAQIGEENTVAESQPLIN
FDTIVTHNNNGESDMEGKENQLQDESEQSEEHLANKVGPEELPEIEQAGS
SNLAHQLSPEAASTVLASDEPDASTGVIEPSDSEDYPPTSPTPIEASEAV
SSPRFNPRNIPPTRSYRRISIELVGSYSDTSDSEEHELEEGTEHAEEYSD
DAPEPHIAESADDSSSNDDMGPYSLSSEDETTTEDEVEFNEDINPADREK
VDYAVNQVMCKCKPKYTWNYDQELLQREHNIINRIDWRGGHTSASSFGQG
YYGSRQVVEQMTLLSSLNVHHGCVNSLNFNRAGDLICSGSDDLTIVVWDW
AKEKQLHRFRSGHNMNIFQTKFIDSAGCLDIVSSSRDGQVRRSVIPPSGG
VIKPIRLYTHSESVHKIIVVPHSRHELMSAGEDAAVKHFDLRASNAATTM
MRCVYNDENERGRVRLFSIAHHPYAPEFCVSGSDDILRVYDKRNLAKAIH
QMAPRNLLEAQITQITCAVYNHSGSEILASYSDAGIYLFDSRNYNRGDYL
HCYKGHINSRTIKGVNFFGPRSEYIVSGSDCGNIFFWDKNTEAIINYMKG
DHVGVVNCLEPHPWMPVLATSGLEHDVKIWTPQGPERKLPEDLLKQTLQR
NFRCNIVESIDLDINNFQYFIRGFLQGSGASHLRQRHTSSLGHQMRDNSS
SRSNGSNASNPTSHRRNSNSSDDTNDEGADADAALDTLHCRTQ*
BS21954.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:07:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8001-PD | 743 | CG8001-PD | 1..743 | 1..743 | 3936 | 100 | Plus |
| CG8001-PB | 743 | CG8001-PB | 1..743 | 1..743 | 3936 | 100 | Plus |
| CG8001-PC | 748 | CG8001-PC | 1..748 | 1..743 | 3920 | 99.3 | Plus |
| CG8001-PA | 748 | CG8001-PA | 1..748 | 1..743 | 3920 | 99.3 | Plus |
| wds-PB | 361 | CG17437-PB | 41..357 | 290..630 | 206 | 24.4 | Plus |
