Clone BS21955 Report

Search the DGRC for BS21955

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:219
Well:55
Vector:pDNR-Dual
Associated Gene/TranscriptCG44325-RB
Protein status:BS21955.pep: full length peptide match
Sequenced Size:410

Clone Sequence Records

BS21955.complete Sequence

410 bp assembled on 2011-01-25

GenBank Submission: KX805730

> BS21955.complete
GAAGTTATCAGTCGACATGGAGTTCAACAATCGCCTCTTGCTGAAGATCA
TCGAGCTGGCCATCGCCATCGCCTGCATTGTGCTATACGAGACGGTTGGT
AACTTGTCCCTCCATCCGGTGATTGTGGCCGGCACCGTTGGTGGCTACAC
CGTCATCTGCGGCGTTCTGCTGATCGGTCATGTGCTCAACTCGCTGGTGG
AGAAGCGCCTGAACGCCCTATTCTCGCTGATCGGCTGCCTGCTGTTCGTG
GCCTCCGGAGCACTGGTGATCGATGAGTGGCACGGCGGACTCCTGAATAC
CGATAGGAAGCGCCAGGCCATTGGAGCCGGTTCCTTGATGATCATCAATG
CGGCTGTCTTCCTTCTGGACACTCTCTGCATCTGCCGGACGTAAAAGCTT
TCTAGACCAT

BS21955.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:09:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG44325-RE 378 CG44325-PE 1..378 17..394 1875 99.7 Plus
CG44325-RB 378 CG44325-PB 1..378 17..394 1875 99.7 Plus
CG44325-RD 441 CG44325-PD 1..374 17..390 1855 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:09:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG44325-RE 1399 CG44325-RE 121..500 16..395 1885 99.7 Plus
CG44325-RB 741 CG44325-RB 121..500 16..395 1885 99.7 Plus
CG44325-RD 836 CG44325-RD 121..495 16..390 1860 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:09:52
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9071583..9071802 395..176 1085 99.5 Minus
X 23542271 X 9071870..9071990 178..58 605 100 Minus
X 23542271 X 9078336..9078379 59..16 220 100 Minus
Blast to na_te.dros performed on 2014-11-26 15:09:53 has no hits.

BS21955.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:17:05 Download gff for BS21955.complete
Subject Subject Range Query Range Percent Splice Strand
CG7267-RB 118..493 17..392 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:48:55 Download gff for BS21955.complete
Subject Subject Range Query Range Percent Splice Strand
CG44325-RB 122..497 17..392 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:07:39 Download gff for BS21955.complete
Subject Subject Range Query Range Percent Splice Strand
CG44325-RB 122..497 17..392 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:07:39 Download gff for BS21955.complete
Subject Subject Range Query Range Percent Splice Strand
X 9071586..9071801 177..392 99 <- Minus
X 9071872..9071989 59..176 100 <- Minus
X 9078337..9078378 17..58 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:48:55 Download gff for BS21955.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 8965619..8965834 177..392 99 <- Minus
arm_X 8965905..8966022 59..176 100 <- Minus
arm_X 8972370..8972411 17..58 100   Minus

BS21955.pep Sequence

Translation from 16 to 393

> BS21955.pep
MEFNNRLLLKIIELAIAIACIVLYETVGNLSLHPVIVAGTVGGYTVICGV
LLIGHVLNSLVEKRLNALFSLIGCLLFVASGALVIDEWHGGLLNTDRKRQ
AIGAGSLMIINAAVFLLDTLCICRT*

BS21955.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:09:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG44325-PE 125 CG44325-PE 1..125 1..125 627 100 Plus
CG44325-PB 125 CG44325-PB 1..125 1..125 627 100 Plus
CG44325-PD 146 CG44325-PD 1..125 1..125 627 100 Plus
CG44325-PC 127 CG44325-PC 1..116 1..114 235 39.7 Plus
CG44325-PA 146 CG44325-PA 1..135 1..114 205 34.1 Plus