BS21955.complete Sequence
410 bp assembled on 2011-01-25
GenBank Submission: KX805730
> BS21955.complete
GAAGTTATCAGTCGACATGGAGTTCAACAATCGCCTCTTGCTGAAGATCA
TCGAGCTGGCCATCGCCATCGCCTGCATTGTGCTATACGAGACGGTTGGT
AACTTGTCCCTCCATCCGGTGATTGTGGCCGGCACCGTTGGTGGCTACAC
CGTCATCTGCGGCGTTCTGCTGATCGGTCATGTGCTCAACTCGCTGGTGG
AGAAGCGCCTGAACGCCCTATTCTCGCTGATCGGCTGCCTGCTGTTCGTG
GCCTCCGGAGCACTGGTGATCGATGAGTGGCACGGCGGACTCCTGAATAC
CGATAGGAAGCGCCAGGCCATTGGAGCCGGTTCCTTGATGATCATCAATG
CGGCTGTCTTCCTTCTGGACACTCTCTGCATCTGCCGGACGTAAAAGCTT
TCTAGACCAT
BS21955.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:09:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG44325-RE | 378 | CG44325-PE | 1..378 | 17..394 | 1875 | 99.7 | Plus |
CG44325-RB | 378 | CG44325-PB | 1..378 | 17..394 | 1875 | 99.7 | Plus |
CG44325-RD | 441 | CG44325-PD | 1..374 | 17..390 | 1855 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:09:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG44325-RE | 1399 | CG44325-RE | 121..500 | 16..395 | 1885 | 99.7 | Plus |
CG44325-RB | 741 | CG44325-RB | 121..500 | 16..395 | 1885 | 99.7 | Plus |
CG44325-RD | 836 | CG44325-RD | 121..495 | 16..390 | 1860 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:09:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9071583..9071802 | 395..176 | 1085 | 99.5 | Minus |
X | 23542271 | X | 9071870..9071990 | 178..58 | 605 | 100 | Minus |
X | 23542271 | X | 9078336..9078379 | 59..16 | 220 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:09:53 has no hits.
BS21955.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:17:05 Download gff for
BS21955.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7267-RB | 118..493 | 17..392 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:48:55 Download gff for
BS21955.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG44325-RB | 122..497 | 17..392 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:07:39 Download gff for
BS21955.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG44325-RB | 122..497 | 17..392 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:07:39 Download gff for
BS21955.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9071586..9071801 | 177..392 | 99 | <- | Minus |
X | 9071872..9071989 | 59..176 | 100 | <- | Minus |
X | 9078337..9078378 | 17..58 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:48:55 Download gff for
BS21955.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8965619..8965834 | 177..392 | 99 | <- | Minus |
arm_X | 8965905..8966022 | 59..176 | 100 | <- | Minus |
arm_X | 8972370..8972411 | 17..58 | 100 | | Minus |
BS21955.pep Sequence
Translation from 16 to 393
> BS21955.pep
MEFNNRLLLKIIELAIAIACIVLYETVGNLSLHPVIVAGTVGGYTVICGV
LLIGHVLNSLVEKRLNALFSLIGCLLFVASGALVIDEWHGGLLNTDRKRQ
AIGAGSLMIINAAVFLLDTLCICRT*
BS21955.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:09:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG44325-PE | 125 | CG44325-PE | 1..125 | 1..125 | 627 | 100 | Plus |
CG44325-PB | 125 | CG44325-PB | 1..125 | 1..125 | 627 | 100 | Plus |
CG44325-PD | 146 | CG44325-PD | 1..125 | 1..125 | 627 | 100 | Plus |
CG44325-PC | 127 | CG44325-PC | 1..116 | 1..114 | 235 | 39.7 | Plus |
CG44325-PA | 146 | CG44325-PA | 1..135 | 1..114 | 205 | 34.1 | Plus |