BS21962.complete Sequence
569 bp assembled on 2011-01-25
GenBank Submission: KX801503
> BS21962.complete
GAAGTTATCAGTCGACATGTCCATTGCGAAGCGTGTGCAGCAATGGGCAA
CGTTCGCGCGCACTTGGCACATTTACGATTGCACTTGGCAGAATCCATTC
GAGTCGGCAAAACTGGTTAAAACGCATTTATTGGGCCTCCAAAAGCCCAT
TTACCACCCAATGAATGACTGCGGGGATCATGTGGTGCTGATCAACACGC
GGGAAATCGCCTTGCCCGGTGACGAGTGGGTGAAGAGGGTTTACTTCCAC
CACACCGGCTATCCTGGTGGCGCTTCGTGGACCCTGGCGTGGCAGCTGCA
CGAGAAGGATCCCACGATGGTGATGAAGAAGGCCGTGTACAACTCGATGC
GCGGAAATCTGCAGCGCAGGCACACCATGCAAAGACTGCACTTGTTCGCC
GACGATCAGGTGCCCGAGGAAATCCTGCAAAACGTCACGAATCAAATCCG
CACGCCGCGCTCTATTCCCCAGCGTCTGGATCATATCGACAAAGAAACGC
TGGAGAACTTCCCCAACATTATGGATTATCCCAAGGATTATATCTTGCGT
TGAAAGCTTTCTAGACCAT
BS21962.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:10:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL13-RA | 537 | CG10603-PA | 1..537 | 17..553 | 2655 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:10:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL13-RA | 671 | CG10603-RA | 89..625 | 17..553 | 2655 | 99.6 | Plus |
| CG10602-RE | 2270 | CG10602-RE | 89..236 | 17..164 | 725 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:10:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18858074..18858462 | 553..165 | 1930 | 99.7 | Minus |
| 2L | 23513712 | 2L | 18858952..18859077 | 164..39 | 615 | 99.2 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:10:32 has no hits.
BS21962.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:17:07 Download gff for
BS21962.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL13-RA | 31..566 | 17..552 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:49:04 Download gff for
BS21962.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL13-RA | 89..624 | 17..552 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:07:53 Download gff for
BS21962.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL13-RA | 89..624 | 17..552 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:07:53 Download gff for
BS21962.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18858075..18858462 | 165..552 | 99 | <- | Minus |
| 2L | 18858952..18859075 | 41..164 | 99 | <- | Minus |
| 2L | 18859137..18859160 | 17..40 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:49:04 Download gff for
BS21962.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18858075..18858462 | 165..552 | 99 | <- | Minus |
| arm_2L | 18858952..18859075 | 41..164 | 99 | <- | Minus |
| arm_2L | 18859137..18859160 | 17..40 | 100 | | Minus |
BS21962.pep Sequence
Translation from 16 to 552
> BS21962.pep
MSIAKRVQQWATFARTWHIYDCTWQNPFESAKLVKTHLLGLQKPIYHPMN
DCGDHVVLINTREIALPGDEWVKRVYFHHTGYPGGASWTLAWQLHEKDPT
MVMKKAVYNSMRGNLQRRHTMQRLHLFADDQVPEEILQNVTNQIRTPRSI
PQRLDHIDKETLENFPNIMDYPKDYILR*
BS21962.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:09:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL13-PA | 178 | CG10603-PA | 1..178 | 1..178 | 982 | 100 | Plus |
