BS21965.complete Sequence
476 bp assembled on 2011-01-25
GenBank Submission: KX801267
> BS21965.complete
GAAGTTATCAGTCGACATGGCAGCTTATACCGAGGATCAGTTGGCTGAAT
TCCAGGAGGCCTTCAACCTGTTCGACAACCGCGGAGATGGCAAAATTCAG
CTGAGCCAGGTGGGCGAGTGCCTGAGGGCCCTGGGCCAGAACCCCACCGA
GTCGGATGTGAAGAAGTGCACCCACCAGCTGAAGCCCGACGAGCGCATCT
CGTTCGAGGTGTTCCTGCCCATCTATCAGGCGATCTCCAAGGCCCGCTCG
GGCGATACGGCTGATGATTTCATCGAAGGACTGCGTCACTTCGACAAGGA
CGCCAGCGGTTATATCTCCTCCGCCGAGCTGCGCCACCTGCTGACCACGC
TGGGCGAGAAGCTCACCGACGAGGAGGTCGAGCAGCTGCTGGCCAACATG
GAGGACCAGCAGGGCAACATCAACTACGAGGAGTTCGTGCGCATGGTCAT
GAGCGGTTAGAAGCTTTCTAGACCAT
BS21965.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:11:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mlc-c-RA | 444 | CG3201-PA | 1..444 | 17..460 | 2190 | 99.5 | Plus |
| Mlc-c-RB | 462 | CG3201-PB | 49..462 | 47..460 | 2040 | 99.5 | Plus |
| Cam-RD | 450 | CG8472-PD | 277..368 | 290..381 | 190 | 80.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:11:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mlc-c-RA | 1302 | CG3201-RA | 116..564 | 12..460 | 2200 | 99.3 | Plus |
| Mlc-c-RB | 1248 | CG3201-RB | 97..510 | 47..460 | 2040 | 99.5 | Plus |
| Cam-RD | 3406 | CG8472-RD | 406..497 | 290..381 | 190 | 80.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:11:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5619874..5620287 | 460..47 | 2040 | 99.5 | Minus |
| 2R | 25286936 | 2R | 12269291..12269382 | 290..381 | 190 | 80.4 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:11:05 has no hits.
BS21965.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:17:08 Download gff for
BS21965.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mlc-c-RA | 140..583 | 17..460 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:49:16 Download gff for
BS21965.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mlc-c-RA | 121..564 | 17..460 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:08:03 Download gff for
BS21965.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mlc-c-RA | 121..564 | 17..460 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:08:03 Download gff for
BS21965.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5619874..5620286 | 48..460 | 99 | <- | Minus |
| X | 5622252..5622281 | 17..47 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:49:16 Download gff for
BS21965.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5513907..5514319 | 48..460 | 99 | <- | Minus |
| arm_X | 5516285..5516314 | 17..47 | 96 | | Minus |
BS21965.pep Sequence
Translation from 16 to 459
> BS21965.pep
MAAYTEDQLAEFQEAFNLFDNRGDGKIQLSQVGECLRALGQNPTESDVKK
CTHQLKPDERISFEVFLPIYQAISKARSGDTADDFIEGLRHFDKDASGYI
SSAELRHLLTTLGEKLTDEEVEQLLANMEDQQGNINYEEFVRMVMSG*
BS21965.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:10:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mlc-c-PA | 147 | CG3201-PA | 1..147 | 1..147 | 754 | 100 | Plus |
| Mlc-c-PB | 153 | CG3201-PB | 15..153 | 9..147 | 708 | 99.3 | Plus |
| Cam-PD | 149 | CG8472-PD | 6..148 | 5..146 | 326 | 46.2 | Plus |
| Cam-PC | 149 | CG8472-PC | 6..148 | 5..146 | 326 | 46.2 | Plus |
| Cam-PE | 149 | CG8472-PE | 6..148 | 5..146 | 326 | 46.2 | Plus |
