BS21974.complete Sequence
494 bp assembled on 2011-01-25
GenBank Submission: KX804839
> BS21974.complete
GAAGTTATCAGTCGACATGGCTGCCACTCGTCGTCTGACACGGGAACTCT
CCGATCTGGTTGAGGCCAAGATGAGCACTCTGCGCAACATCGAGAGTAGC
GATGAGTCCCTGCTGATGTGGACGGGTCTTTTGGTTCCGGAAAAGGCGCC
CTACAACAAGGGCGCCTTCCGCATCGAAATCAACTTCCCGCCCCAGTATC
CCTTTATGCCACCAAAGATCCTATTCAAGACGAAAATCTATCACCCCAAC
GTGGATGAGAAGGGGGAGGTGTGCCTGCCCATCATCAGCACAGACAACTG
GAAGCCCACAACGCGCACAGAGCAGGTGCTCCAGGCCCTGGTAGCCATCG
TCCACAACCCGGAGCCAGAACATCCGCTTCGTTCTGACCTGGCCGAGGAG
TTCGTAAGGGAGCACAAGAAGTTCATGAAGACGGCCGAAGAGTTCACCAA
GAAGAATGCGGAGAAGCGACCAGAGTGAAAGCTTTCTAGACCAT
BS21974.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:12:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ubc84D-RA | 462 | CG12799-PA | 1..462 | 17..478 | 2310 | 100 | Plus |
| Ubc10-RA | 465 | CG5788-PA | 93..438 | 109..454 | 440 | 75.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:12:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ubc84D-RA | 637 | CG12799-RA | 99..561 | 17..479 | 2315 | 100 | Plus |
| Ubc10-RA | 999 | CG5788-RA | 401..746 | 109..454 | 440 | 75.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:12:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7518896..7519358 | 479..17 | 2315 | 100 | Minus |
| 2R | 25286936 | 2R | 17788665..17789010 | 454..109 | 440 | 75.1 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:12:15 has no hits.
BS21974.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:17:11 Download gff for
BS21974.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ubc84D-RA | 99..559 | 17..477 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:49:39 Download gff for
BS21974.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ubc84D-RA | 99..559 | 17..477 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:08:29 Download gff for
BS21974.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ubc84D-RA | 99..559 | 17..477 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:08:29 Download gff for
BS21974.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7518898..7519358 | 17..477 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:49:39 Download gff for
BS21974.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3344620..3345080 | 17..477 | 100 | | Minus |
BS21974.pep Sequence
Translation from 16 to 477
> BS21974.pep
MAATRRLTRELSDLVEAKMSTLRNIESSDESLLMWTGLLVPEKAPYNKGA
FRIEINFPPQYPFMPPKILFKTKIYHPNVDEKGEVCLPIISTDNWKPTTR
TEQVLQALVAIVHNPEPEHPLRSDLAEEFVREHKKFMKTAEEFTKKNAEK
RPE*
BS21974.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:10:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ubc84D-PA | 153 | CG12799-PA | 1..153 | 1..153 | 802 | 100 | Plus |
| Ubc10-PA | 154 | CG5788-PA | 1..152 | 1..152 | 581 | 66.4 | Plus |
| CG17030-PA | 180 | CG17030-PA | 9..161 | 1..152 | 358 | 41.8 | Plus |
| eff-PC | 147 | CG7425-PC | 2..146 | 3..148 | 247 | 32.2 | Plus |
| eff-PB | 147 | CG7425-PB | 2..146 | 3..148 | 247 | 32.2 | Plus |
