BS21975.complete Sequence
402 bp assembled on 2011-01-25
GenBank Submission: KX804121
> BS21975.complete
GAAGTTATCAGTCGACATGCAGATCGTTGCTCTCACCCTCGTTGCGTTTG
TGGCCATTGCCGGTGCCTCCTGCCCGTATGCAGCTCCAGCTCCAGCTTAT
TCAGCGCCCGCTGCTTCTTCTGGCTACCCGGCTCCACCATGCCCCACCAA
CTACCTGTTCAGCTGCCAGCCCAATTTGGCCCCAGCTCCTTGTGCCCAGG
AGGCCCCAGCCTATGGATCCGCCGGCGCCTACACAGAACAGGTGCCCCAC
TACGTGGGAAGTCCCAACCGAGAGCAGTTGCAGCAATTTCACCAGCGCAT
TGGAATGGCGGCTTTGATGGAGGAACTGCGCGGCTTGGGCCAAGGAATCC
AGGGTCAACAGTACTAGAAGCTTTCTAGACCATTCGTGGGCGCCTCTATG
GG
BS21975.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:12:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vm32E-RB | 351 | CG16874-PB | 1..351 | 17..367 | 1755 | 100 | Plus |
| Vm32E-RA | 351 | CG16874-PA | 1..351 | 17..367 | 1755 | 100 | Plus |
| Vm34Ca-RA | 360 | CG9271-PA | 210..268 | 127..185 | 205 | 89.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:12:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vm32E-RB | 499 | CG16874-RB | 31..382 | 16..367 | 1760 | 100 | Plus |
| Vm32E-RA | 437 | CG16874-RA | 31..382 | 16..367 | 1760 | 100 | Plus |
| Vm34Ca-RA | 491 | CG9271-RA | 256..314 | 127..185 | 205 | 89.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:12:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11171284..11171635 | 367..16 | 1760 | 100 | Minus |
| 2L | 23513712 | 2L | 13411318..13411376 | 185..127 | 205 | 89.8 | Minus |
Blast to na_te.dros performed 2014-11-26 15:12:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TART-C | 11124 | TART-C TARTC 11124bp | 8764..8859 | 101..8 | 115 | 59.4 | Minus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7311..7369 | 101..43 | 106 | 64.4 | Minus |
BS21975.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:17:12 Download gff for
BS21975.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vm32E-RA | 32..386 | 17..371 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:49:43 Download gff for
BS21975.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vm32E-RA | 32..386 | 17..371 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:08:40 Download gff for
BS21975.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vm32E-RA | 32..386 | 17..371 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:08:40 Download gff for
BS21975.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11171280..11171634 | 17..371 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:49:43 Download gff for
BS21975.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11171280..11171634 | 17..371 | 99 | | Minus |
BS21975.pep Sequence
Translation from 16 to 366
> BS21975.pep
MQIVALTLVAFVAIAGASCPYAAPAPAYSAPAASSGYPAPPCPTNYLFSC
QPNLAPAPCAQEAPAYGSAGAYTEQVPHYVGSPNREQLQQFHQRIGMAAL
MEELRGLGQGIQGQQY*
BS21975.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:06:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vm32E-PB | 116 | CG16874-PB | 1..116 | 1..116 | 616 | 100 | Plus |
| Vm32E-PA | 116 | CG16874-PA | 1..116 | 1..116 | 616 | 100 | Plus |
| Vm34Ca-PA | 119 | CG9271-PA | 33..116 | 16..83 | 227 | 53.6 | Plus |
| Vm26Ab-PB | 168 | CG9046-PB | 90..160 | 15..79 | 211 | 59.2 | Plus |
| Vm26Ab-PA | 168 | CG9046-PA | 90..160 | 15..79 | 211 | 59.2 | Plus |
