BS22001.complete Sequence
2231 bp assembled on 2011-02-17
GenBank Submission: KX806137
> BS22001.complete
GAAGTTATCAGTCGACATGGGCATTACCGGCCTAATTCCCTTCGTGGGCA
AGGCCTCCTCGCAGCTGCATCTAAAAGACATTCGCGGCAGCACAGTGGCC
GTGGACACATATTGCTGGCTACACAAGGGAGTCTTCGGCTGTGCGGAGAA
GTTGGCCCGCGGCGAGGATACGGATGTTTATATACAATACTGCTTGAAGT
ATGTGAACATGCTGCTGTCCTACGACATCAAGCCCATTCTGGTCTTCGAT
GGGCAGCACTTGCCGGCCAAGGCTTTGACCGAAAAGCGGAGAAGGGACTC
CAGGAAGCAGAGCAAAGAGCGGGCGGCGGAACTCCTTCGATTGGGTCGCA
TCGAGGAGGCCCGATCCCATATGCGACGCTGCGTGGATGTCACCCACGAC
ATGGCGTTGCGGTTGATCCGGGAATGCCGGAGCCGGAATGTTGACTGCAT
TGTGGCGCCCTACGAGGCCGATGCCCAAATGGCCTGGCTGAATAGAGCAG
ATGTGGCCCAGTACATCATCACCGAGGACTCGGACTTAACGCTTTTTGGA
GCCAAGAACATCATATTCAAGCTGGACCTCAACGGCAGCGGCCTGCTGGT
GGAGGCGGAAAAACTTCACCTGGCCATGGGCTGCACGGAGGAGAAGTACC
ACTTTGACAAGTTCCGGCGCATGTGCATCCTATCCGGCTGTGATTACCTG
GACTCACTGCCTGGCATCGGACTGGCCAAGGCGTGCAAATTTATACTAAA
AACGGAACAGGAAGACATGCGAATAGCATTAAAAAAGATTCCAAGTTACC
TCAATATGCGCAATCTTGAGGTAGATGACGACTATATTGAAAACTTCATG
AAAGCGGAGGCCACCTTCAGGCACATGTTTATCTACAACCCGCTAGAGCG
TCGCATGCAGCGGTTGTGTGCCCTCGAAGATTATGAAACTGATGAGCGCT
ACTGCAGCAATGCTGGCACCTTGCTGGAGGATAGCGAGCAGGCTTTGCAC
TTGGCCCTAGGCAACTTGAACCCCTTCTCTATGAAGCGACTGGACTCTTG
GACACCGGAAAAGGCATGGCCAACGCCGAAGAACGTGAAACGATCCAAGC
ACAAAAGTATTTGGCAAACGAATTTTCAAAGCGAAAACACTCACACGCCG
AAGAAAGAAAATCCGTGTGCCTTGTTCTTCAAAAAAGTGGATTTTGTGGG
CAAAACTCTAAACGAGGAAATCGAAGCTAATCAGCGACTGGAACAGGCTA
AACAAACGGAGGCCGAGTTGTTTAACATGTACAGTTTCAAAGCCAAAAGG
AGGAGAAGTCCGAGCAGGGAAGATTCTGTAGATCAAGAACGTACACCTCC
TCCGTCGCCGGTGCACAAAAGTCGGCACAATCCATTTGCCAAGGAAAGGA
CTGGAGAAGAAGCTAATCAGCGATCCCCAGTAGTTTGTGAGAATGCCTCT
TTGCTGCGTTTGCTTAGTCCGAAAAAGGCAAGTCCGTTGGATGGAGAAGC
TGGTGTAAAAAAGGTTGATTCGCTTAAAAGAAGCATATTCGCCAAGGAAC
AAGTTCAGATCCGAAGTCGCTTCTTCGCCACGCAGGATGAACAGACAAGG
CTTCAAAGGGAGCACTTAAGAGATACGGAAAATGACGATATGGATGAGCA
GAAGCTGAGCTCTCACTCAGGCCATAAGAAACTAAGACTAGTATGTAAAG
ACATTCCAGGGAAGAACCCAATAAGACAACGTTGTAGTTCACAAATCAGT
GACGGTGAAACAGATACAGATACCACAGCCTCTTCTCTTTTGGAATCACA
AGATAAAGGTGTTCCTTCGCCTTTAGAATCCCAAGAAGATCTCAACAACT
CTCAACCCCAAATACCAACTGAAGGCAATACCAATTCAACAACTATTCGC
ATTAAGTCACTGGATTTACTTCTGGAAAACTCTCCGGAACCCACTCAGGA
ATCCGACAGGAACAATAATGATGCCATCATTCTGCTATCGGACGACAGCT
GTAGCTCGGATCAGAGAGCATCATCTACCTCATCCTCCAGCCAGCAACGC
CAGAACTTTTTGCCAACCAGCAAACGAAGAGTGGGGCTGAGTAAACCCTC
CACTGCCAAGAAGGGCACTCCTAAATCTAGGACGAATGGAAAACTGGGTG
CCGTGAGCCAGAATCAAACCAAGCTCAGCATGTTTGGCTTCCAGACGAAA
CCTGTCCTCAAATAGAAGCTTTCTAGACCAT
BS22001.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:09:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tos-RA | 2199 | CG10387-PA | 1..2199 | 17..2215 | 10995 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:09:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tos-RA | 2390 | CG10387-RA | 117..2317 | 16..2216 | 11005 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:09:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18679704..18681101 | 2216..819 | 6990 | 100 | Minus |
| 2L | 23513712 | 2L | 18681152..18681959 | 823..16 | 4040 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:09:15 has no hits.
BS22001.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-17 10:42:32 Download gff for
BS22001.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tos-RA | 198..2390 | 17..2209 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:36:21 Download gff for
BS22001.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tos-RA | 118..2310 | 17..2209 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:14:23 Download gff for
BS22001.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tos-RA | 118..2310 | 17..2209 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:14:23 Download gff for
BS22001.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18679711..18681099 | 821..2209 | 100 | <- | Minus |
| 2L | 18681155..18681958 | 17..820 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:36:21 Download gff for
BS22001.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18679711..18681099 | 821..2209 | 100 | <- | Minus |
| arm_2L | 18681155..18681958 | 17..820 | 100 | | Minus |
BS22001.pep Sequence
Translation from 16 to 2214
> BS22001.pep
MGITGLIPFVGKASSQLHLKDIRGSTVAVDTYCWLHKGVFGCAEKLARGE
DTDVYIQYCLKYVNMLLSYDIKPILVFDGQHLPAKALTEKRRRDSRKQSK
ERAAELLRLGRIEEARSHMRRCVDVTHDMALRLIRECRSRNVDCIVAPYE
ADAQMAWLNRADVAQYIITEDSDLTLFGAKNIIFKLDLNGSGLLVEAEKL
HLAMGCTEEKYHFDKFRRMCILSGCDYLDSLPGIGLAKACKFILKTEQED
MRIALKKIPSYLNMRNLEVDDDYIENFMKAEATFRHMFIYNPLERRMQRL
CALEDYETDERYCSNAGTLLEDSEQALHLALGNLNPFSMKRLDSWTPEKA
WPTPKNVKRSKHKSIWQTNFQSENTHTPKKENPCALFFKKVDFVGKTLNE
EIEANQRLEQAKQTEAELFNMYSFKAKRRRSPSREDSVDQERTPPPSPVH
KSRHNPFAKERTGEEANQRSPVVCENASLLRLLSPKKASPLDGEAGVKKV
DSLKRSIFAKEQVQIRSRFFATQDEQTRLQREHLRDTENDDMDEQKLSSH
SGHKKLRLVCKDIPGKNPIRQRCSSQISDGETDTDTTASSLLESQDKGVP
SPLESQEDLNNSQPQIPTEGNTNSTTIRIKSLDLLLENSPEPTQESDRNN
NDAIILLSDDSCSSDQRASSTSSSSQQRQNFLPTSKRRVGLSKPSTAKKG
TPKSRTNGKLGAVSQNQTKLSMFGFQTKPVLK*
BS22001.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:23:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tos-PA | 732 | CG10387-PA | 1..732 | 1..732 | 3799 | 100 | Plus |
| Fen1-PA | 385 | CG8648-PA | 1..250 | 1..243 | 173 | 26.6 | Plus |
