BS22004.complete Sequence
833 bp assembled on 2011-01-25
GenBank Submission: KX806038
> BS22004.complete
GAAGTTATCAGTCGACATGGAGAGGATCATGGGCAGGAATGGATCGCTCC
TACTGACCGCCGTCCTCATAATTATCCTGGATGTTTTGCTTGCACCAGTG
GGTGCCAACCTGTGGACACGACACAATAGCAATGCCTATCAAACCAGGAG
GCGCTCAGGTCCCAGCAATCGGTGTCCCAAGGTGGGAGCCATTAAGAACT
TCGATTTGGAGCGCATGATGGGCTGTTGGCACGTGGTTCAGTATTACGCA
TCCACAGAGGAACTTCCGGAGTACGCGTGCATGCGCAGTCACTTTTCCTT
TTCCAAAGAGGATCAGCATATAACGATGAACTTTAGCTACATATTTGCGG
AGGATCCGCTGCGCGAGAAGCTCGTGGGCAACATCACCTGGATGATACCC
AAATTCCAAGAGCCAGGACATTGGCAGCACACGGAGGACATATATGAGGG
CATCTACAACACATACGTTCTGGACACGGACTACGACACCTGGGGCCTGG
TGATGCACTGCGCCGAGAAGAAGAAGCAACCACGTTACCTGTCCGCCCTG
CTTTTGTCGCGGAAAACATCGTTGGCCGACAACGAGATCAGCTTTCTGCG
CGGCAAGTTGCCGCAGGATATCGACACATCCTTTATGTTTAACATCGGGC
AGGAATCGTGCGACAATCTAATGGAATCCAGTCGCGACGATCCACTGGCC
TATGTGGTGAATGGACGCAAGAGAGCCAAGGAAATCTTCAAAATTATCAA
TAAGCCTGACGGCAGAGTGCGCGCTAGTAGCGAAGCGAGAAGCTATGAGC
AAAGCGAGAAGCTGTGAAAGCTTTCTAGACCAT
BS22004.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:14:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Karl-RD | 801 | CG4139-PD | 1..801 | 17..817 | 3975 | 99.8 | Plus |
| Karl-RC | 801 | CG4139-PC | 1..801 | 17..817 | 3975 | 99.8 | Plus |
| Karl-RB | 801 | CG4139-PB | 1..801 | 17..817 | 3975 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:14:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Karl-RD | 1774 | CG4139-RD | 452..1252 | 17..817 | 3975 | 99.8 | Plus |
| Karl-RC | 2447 | CG4139-RC | 1125..1925 | 17..817 | 3975 | 99.8 | Plus |
| Karl-RB | 1418 | CG4139-RB | 96..896 | 17..817 | 3975 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:14:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11791358..11791731 | 444..817 | 1840 | 99.5 | Plus |
| X | 23542271 | X | 11788939..11789105 | 17..183 | 835 | 100 | Plus |
| X | 23542271 | X | 11790856..11790995 | 180..319 | 700 | 100 | Plus |
| X | 23542271 | X | 11791061..11791189 | 320..448 | 630 | 99.2 | Plus |
| 2R | 25286936 | 2R | 5467084..5467137 | 810..757 | 240 | 96.3 | Minus |
| 2R | 25286936 | 2R | 858332..858385 | 809..756 | 195 | 90.7 | Minus |
| 2L | 23513712 | 2L | 22794705..22794758 | 756..809 | 195 | 90.7 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:14:55 has no hits.
BS22004.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:17:16 Download gff for
BS22004.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Karl-RB | 94..893 | 17..816 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:50:14 Download gff for
BS22004.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Karl-RA | 96..895 | 17..816 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:09:31 Download gff for
BS22004.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Karl-RB | 96..895 | 17..816 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:09:31 Download gff for
BS22004.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11788939..11789103 | 17..181 | 100 | -> | Plus |
| X | 11790858..11790995 | 182..319 | 100 | -> | Plus |
| X | 11791061..11791184 | 320..443 | 100 | -> | Plus |
| X | 11791358..11791730 | 444..816 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:50:14 Download gff for
BS22004.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11682972..11683136 | 17..181 | 100 | -> | Plus |
| arm_X | 11684891..11685028 | 182..319 | 100 | -> | Plus |
| arm_X | 11685094..11685217 | 320..443 | 100 | -> | Plus |
| arm_X | 11685391..11685763 | 444..816 | 99 | | Plus |
BS22004.pep Sequence
Translation from 16 to 816
> BS22004.pep
MERIMGRNGSLLLTAVLIIILDVLLAPVGANLWTRHNSNAYQTRRRSGPS
NRCPKVGAIKNFDLERMMGCWHVVQYYASTEELPEYACMRSHFSFSKEDQ
HITMNFSYIFAEDPLREKLVGNITWMIPKFQEPGHWQHTEDIYEGIYNTY
VLDTDYDTWGLVMHCAEKKKQPRYLSALLLSRKTSLADNEISFLRGKLPQ
DIDTSFMFNIGQESCDNLMESSRDDPLAYVVNGRKRAKEIFKIINKPDGR
VRASSEARSYEQSEKL*
BS22004.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:10:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Karl-PD | 266 | CG4139-PD | 1..266 | 1..266 | 1411 | 100 | Plus |
| Karl-PC | 266 | CG4139-PC | 1..266 | 1..266 | 1411 | 100 | Plus |
| Karl-PB | 266 | CG4139-PB | 1..266 | 1..266 | 1411 | 100 | Plus |
| Karl-PA | 266 | CG4139-PA | 1..266 | 1..266 | 1411 | 100 | Plus |
