BS22005.complete Sequence
1025 bp assembled on 2011-01-31
GenBank Submission: KX803577
> BS22005.complete
GAAGTTATCAGTCGACATGTGCATTTTCATCGATTGCTTATTAAGCCCCT
TGATTATGTGGCCAGCTACTATCGGCGTGGGCATCTACTTCTTGAAGGAG
TACATGCAAGGTGGAAAGTTTACGAAGGACACCGATGAGACCGGAAAGGT
ATTCATTGTGACCGGTGCCAACACGGGCATTGGCAAGGAGACGGCTCTGG
AGATAGCCAGACGTGGGGGAACTGTGTACTTGGCTTGCAGGGATATGAAC
CGATGTGAAAAGGCCCGCAAGGATATCATCAAGGAGACAAATAACCAGAA
TATATTCTCTCGAGAGCTGGACCTAAGTTCCCTGGACTCCATTCGCAAAT
TTGTTGATGGCTTCAAGAAGGAGCAACCCAAGCTTCACGTCCTGATCAAC
AATGCCGGCGTGATGCGTTGTCCCAAGACCCTAACCAAGGATGGCTACGA
ACTGCAGCTGGGAGTAAATCATATTGGTCACTTTTTGTTGACTAACTTGC
TGCTCGACGTACTGAAGAACTCGGCTCCCAGTCGCATTGTCGTTGTGTCC
AGTCTGGCACATGCGCGTGGCTCCATTAACGTAGCCGACCTCAACAGCGA
GAAGTCGTATGATGAGGGCCTAGCCTACAGCCAGAGCAAGTTGGCCAACG
TCCTGTTCACCCGGGAATTGGCCAAGCGTTTGGAGGGCAGCGGAGTCACA
GTAAATGCCCTTCACCCTGGTGTGGTGGACACTGAGCTGGCGCGGAACTG
GGCCTTCTTCCAGACAAACCTTGTGAAGTTCTTTTTAAAGCCAATGATTT
GGCCGCTTTTAAAGACACCGAAGAGTGGAGCTCAGACCTCGATTTACGCT
GCTTTGGATCCGGAGCTTAAGAACATCTCTGGCCTGTACTTCAGTGACTG
CAAACCAAAGCCTGTGGCTTCTGGTGCCTTGGACGATAAGGTTGCCAAGT
TCCTGTGGGCCGAGAGCGAGAAGTGGACCGGCTTAGATAAGCTGGAAGCT
AATAACTAAAAGCTTTCTAGACCAT
BS22005.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:35:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2064-RA | 993 | CG2064-PA | 1..993 | 17..1009 | 4920 | 99.7 | Plus |
| CG2065-RB | 903 | CG2065-PB | 1..648 | 104..751 | 1260 | 79.6 | Plus |
| CG2065-RA | 903 | CG2065-PA | 1..648 | 104..751 | 1260 | 79.6 | Plus |
| CG2065-RB | 903 | CG2065-PB | 723..879 | 826..982 | 185 | 74.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:35:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2064-RA | 1210 | CG2064-RA | 110..1103 | 17..1010 | 4925 | 99.7 | Plus |
| CG2065-RB | 1233 | CG2065-RB | 183..833 | 101..751 | 1275 | 79.7 | Plus |
| CG2065-RA | 1204 | CG2065-RA | 154..804 | 101..751 | 1275 | 79.7 | Plus |
| CG2065-RB | 1233 | CG2065-RB | 908..1064 | 826..982 | 185 | 74.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:35:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7666685..7666948 | 516..779 | 1320 | 100 | Plus |
| 2R | 25286936 | 2R | 7666146..7666409 | 97..360 | 1305 | 99.6 | Plus |
| 2R | 25286936 | 2R | 7667004..7667236 | 778..1010 | 1150 | 99.6 | Plus |
| 2R | 25286936 | 2R | 7666473..7666630 | 360..517 | 790 | 100 | Plus |
| 2R | 25286936 | 2R | 7664037..7664287 | 101..351 | 730 | 86.1 | Plus |
| 2R | 25286936 | 2R | 7665937..7666017 | 17..97 | 390 | 98.8 | Plus |
| 2R | 25286936 | 2R | 7664354..7664509 | 362..517 | 315 | 80.1 | Plus |
| 2R | 25286936 | 2R | 7664680..7664808 | 623..751 | 300 | 82.2 | Plus |
| 2R | 25286936 | 2R | 7656165..7656370 | 527..732 | 280 | 75.7 | Plus |
| 2R | 25286936 | 2R | 7655578..7655668 | 104..194 | 245 | 84.6 | Plus |
| X | 23542271 | X | 6342606..6342754 | 392..540 | 190 | 75.2 | Plus |
| 2R | 25286936 | 2R | 7664944..7665100 | 826..982 | 185 | 74.5 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:35:05 has no hits.
BS22005.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-14 14:31:50 Download gff for
BS22005.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2064-RA | 105..1095 | 17..1007 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:02:47 Download gff for
BS22005.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2064-RA | 110..1100 | 17..1007 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:05:01 Download gff for
BS22005.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2064-RA | 110..1100 | 17..1007 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:05:01 Download gff for
BS22005.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7666474..7666630 | 361..517 | 100 | -> | Plus |
| 2R | 7666687..7666946 | 518..777 | 100 | -> | Plus |
| 2R | 7667004..7667233 | 778..1007 | 99 | | Plus |
| 2R | 7665937..7666016 | 17..96 | 98 | -> | Plus |
| 2R | 7666146..7666409 | 97..360 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:02:47 Download gff for
BS22005.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3553442..3553521 | 17..96 | 98 | -> | Plus |
| arm_2R | 3553651..3553914 | 97..360 | 99 | -> | Plus |
| arm_2R | 3553979..3554135 | 361..517 | 100 | -> | Plus |
| arm_2R | 3554192..3554451 | 518..777 | 100 | -> | Plus |
| arm_2R | 3554509..3554738 | 778..1007 | 99 | | Plus |
BS22005.pep Sequence
Translation from 16 to 1008
> BS22005.pep
MCIFIDCLLSPLIMWPATIGVGIYFLKEYMQGGKFTKDTDETGKVFIVTG
ANTGIGKETALEIARRGGTVYLACRDMNRCEKARKDIIKETNNQNIFSRE
LDLSSLDSIRKFVDGFKKEQPKLHVLINNAGVMRCPKTLTKDGYELQLGV
NHIGHFLLTNLLLDVLKNSAPSRIVVVSSLAHARGSINVADLNSEKSYDE
GLAYSQSKLANVLFTRELAKRLEGSGVTVNALHPGVVDTELARNWAFFQT
NLVKFFLKPMIWPLLKTPKSGAQTSIYAALDPELKNISGLYFSDCKPKPV
ASGALDDKVAKFLWAESEKWTGLDKLEANN*
BS22005.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:04:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2064-PA | 330 | CG2064-PA | 1..330 | 1..330 | 1709 | 100 | Plus |
| CG2065-PB | 300 | CG2065-PB | 1..300 | 30..329 | 1217 | 76.3 | Plus |
| CG2065-PA | 300 | CG2065-PA | 1..300 | 30..329 | 1217 | 76.3 | Plus |
| CG30491-PB | 331 | CG30491-PB | 26..323 | 24..321 | 1108 | 69.1 | Plus |
| CG30491-PA | 331 | CG30491-PA | 26..323 | 24..321 | 1108 | 69.1 | Plus |
