BS22006.complete Sequence
1538 bp assembled on 2011-02-17
GenBank Submission: KX806134
> BS22006.complete
GAAGTTATCAGTCGACATGAGTGGCGTCCAGACCGCCGAAGCCGAGGCGC
AGGCCCAAAACCAAGCGAATGGCAACAGGACCAGGTCGCGTTCCCACTTG
GACAACACAATGGCCATCCGACTGCTGCCGTTGCCCGTGCGAGCCCAGCT
ATGTGCCCACTTGGATGCCCTAGACGTATGGCAACAGCTGGCCACGGCCG
TAAAACTCTATCCCGACCAGGTGGAGCAGATAAGCAGCCAGAAGCAGCGT
GGCCGCTCAGCCTCCAATGAGTTCCTCAACATTTGGGGCGGTCAGTACAA
TCACACGGTGCAAACATTGTTTGCTTTGTTCAAAAAATTGAAGCTTCATA
ACGCCATGCGTCTGATCAAAGATTACGTTAGCGAGGATCTGCACAAGTAC
ATACCGAGGAGCGTGCCCACCATCAGCGAGCTGCGCGCTGCTCCCGATTC
CAGTGCCAAAGTAAACAACGGCCCGCCGTTTCCCTCCTCCTCGGGCGTCA
GCAACTCAAACAACAATCGCACCAGCACAACGGCAACGGAGGAGATACCC
AGCCTGGAGTCCCTGGGCAATATACACATTAGCACCGTACAGCGGGCAGC
CGAATCCTTGCTGGAGATCGATTATGCGGAGCTAGAAAACGCCACGGACG
GCTGGAGTCCGGATAATCGACTGGGACAGGGCGGATTCGGAGACGTGTAC
CGCGGCAAATGGAAGCAACTGGACGTGGCCATCAAGGTGATGAACTACCG
CAGTCCCAACATCGACCAGAAAATGGTGGAGCTGCAGCAGAGCTACAACG
AACTCAAGTATTTAAACAGCATCCGGCACGACAATATCCTGGCCCTCTAC
GGATACAGCATCAAAGGTGGTAAGCCGTGCCTCGTCTACCAGCTGATGAA
GGGCGGCTCCCTGGAGGCTCGTTTACGAGCGCATAAGGCACAAAACCCAC
TACCAGCACTCACCTGGCAGCAGCGGTTTAGCATCAGCCTCGGCACGGCT
AGAGGCATCTACTTTCTGCACACGGCGCGAGGCACACCGCTGATTCATGG
AGATATTAAGCCGGCCAACATCCTGCTGGACCAATGTCTGCAGCCAAAAA
TCGGAGACTTCGGTCTGGTGCGCGAGGGTCCCAAGTCCTTGGACGCTGTG
GTGGAAGTGAATAAAGTTTTCGGCACTAAGATCTACCTGCCACCGGAGTT
CCGCAACTTCAGACAACTCAGCACGGGCGTGGACGTCTACAGCTTCGGCA
TTGTGCTGTTGGAGGTGTTCACGGGTCGTCAGGTGACGGATCGCGTGCCG
GAAAACGAGACGAAGAAGAATTTGCTGGACTACGTTAAGCAGCAGTGGCG
GCAAAACCGGATGGAGCTGCTAGAGAAGCACTTAGCAGCACCGATGGGCA
AGGAGCTGGACATGTGCATGTGCGCCATCGAGGCGGGCTTGCACTGTACT
GCCCTGGATCCGCAGGATCGCCCATCCATGAACGCGGTGCTCAAGCGTTT
CGAACCGTTTGTTACCGACTAGAAGCTTTCTAGACCAT
BS22006.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:10:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pll-RB | 1506 | CG5974-PB | 1..1506 | 17..1522 | 7530 | 100 | Plus |
| pll-RA | 1506 | CG5974-PA | 1..1506 | 17..1522 | 7530 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:10:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pll-RB | 1852 | CG5974-RB | 226..1732 | 17..1523 | 7535 | 100 | Plus |
| pll-RA | 1931 | CG5974-RA | 226..1732 | 17..1523 | 7535 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:10:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27251914..27252579 | 1002..337 | 3330 | 100 | Minus |
| 3R | 32079331 | 3R | 27251330..27251852 | 1523..1001 | 2615 | 100 | Minus |
| 3R | 32079331 | 3R | 27252638..27252957 | 336..17 | 1600 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:10:11 has no hits.
BS22006.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-17 10:42:33 Download gff for
BS22006.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pll-RA | 224..1729 | 17..1522 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:36:27 Download gff for
BS22006.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pll-RA | 226..1731 | 17..1522 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:14:45 Download gff for
BS22006.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pll-RA | 226..1731 | 17..1522 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:14:45 Download gff for
BS22006.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27251331..27251850 | 1003..1522 | 100 | <- | Minus |
| 3R | 27251914..27252579 | 337..1002 | 100 | <- | Minus |
| 3R | 27252638..27252957 | 17..336 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:36:27 Download gff for
BS22006.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23077053..23077572 | 1003..1522 | 100 | <- | Minus |
| arm_3R | 23077636..23078301 | 337..1002 | 100 | <- | Minus |
| arm_3R | 23078360..23078679 | 17..336 | 100 | | Minus |
BS22006.pep Sequence
Translation from 16 to 1521
> BS22006.pep
MSGVQTAEAEAQAQNQANGNRTRSRSHLDNTMAIRLLPLPVRAQLCAHLD
ALDVWQQLATAVKLYPDQVEQISSQKQRGRSASNEFLNIWGGQYNHTVQT
LFALFKKLKLHNAMRLIKDYVSEDLHKYIPRSVPTISELRAAPDSSAKVN
NGPPFPSSSGVSNSNNNRTSTTATEEIPSLESLGNIHISTVQRAAESLLE
IDYAELENATDGWSPDNRLGQGGFGDVYRGKWKQLDVAIKVMNYRSPNID
QKMVELQQSYNELKYLNSIRHDNILALYGYSIKGGKPCLVYQLMKGGSLE
ARLRAHKAQNPLPALTWQQRFSISLGTARGIYFLHTARGTPLIHGDIKPA
NILLDQCLQPKIGDFGLVREGPKSLDAVVEVNKVFGTKIYLPPEFRNFRQ
LSTGVDVYSFGIVLLEVFTGRQVTDRVPENETKKNLLDYVKQQWRQNRME
LLEKHLAAPMGKELDMCMCAIEAGLHCTALDPQDRPSMNAVLKRFEPFVT
D*
BS22006.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:23:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pll-PB | 501 | CG5974-PB | 1..501 | 1..501 | 2605 | 100 | Plus |
| pll-PA | 501 | CG5974-PA | 1..501 | 1..501 | 2605 | 100 | Plus |
| slpr-PD | 1148 | CG2272-PD | 123..387 | 200..496 | 222 | 28.5 | Plus |
| slpr-PC | 1148 | CG2272-PC | 123..387 | 200..496 | 222 | 28.5 | Plus |
| slpr-PA | 1148 | CG2272-PA | 123..387 | 200..496 | 222 | 28.5 | Plus |
