BS22008.complete Sequence
1100 bp assembled on 2011-01-31
GenBank Submission: KX800479
> BS22008.complete
GAAGTTATCAGTCGACATGCCACGCAATACCAAAGACACCACCGGAGTGC
TTTACGAATCCGATGTCGAGACAGTAGACGGTGGATTGTCGACGGAGCTA
AGCAATCGGAAGACCACCGATGGAAGTAAACTGGAGTTGGTATGGGTCAA
TATAGTGCTGTTCGTGATCCTTCACATATCTTCGCTATATGGAGTCTGGC
TGCTCTTCACTTCGGCCACGTGGACAACGGTCGTGCTCTTTTGGCCAACG
GTTGTGGTGACCATTTTGGGAGTTTCCGGCGGTGCCCATCGTTTGTGGGC
TCATCGCACATTCAAGGCGAATACACCGCTCAAGCTGATCTTTTTGTTCC
TGAACACTTTGGCCTTTCAGGATGCGGTCTACTATTGGGCCCGGGATCAT
CGCGTCCACCACAAGTATACGGAAACTGATGCGGATCCGTACAATTCGCA
ACGTGGTTGGTTCTTTGCCCACATCGGTTGGTTGTGCTGCCGCAAGCATC
CGGAGGTTGTGGAGAAGGGCAAGCAAATAGATCTATCCGATCTGGAGGCA
GATCCACTGATCATGTTCCAGAAGAAATACTACCTGCTGCTAATGCCAAT
CATTTGCTTTGTCCTGCCCACCGTTTTGCCCATGTATCTGTGGGGCGAAT
CACTCAATGTGTCCTGGCACGTGATGGCCCTGCTTCGATGGTGCCTCAGT
CTCAATCTCATCTGGACGGTCAATAGCTCGGCCCACATGCACGGCATGCG
GCCTTACGACAAGAACATATGTCCAGTCGATCAGGGCTTCCTCATATTTT
TCCGTGTGGGTGAGGGATACCACAACTACCACCATGTCTTTCCCTGGGAC
TACAAGAGCGCCGAGCTGGGCAAGTATTCGCAGGATGTGACCACCAAGTT
TATCGAATTCATGGCCTATTTGGGTTGGGCCTACGATCTAAAGAGTGTCT
CACTGGATTTGGTCAAGCAGCGAGTCCAGCGCTCTGGCGATGGATCACAT
CCTGTTTGGGGTTGGGGCGATAAGGATCAATTAAAGGAGGACGTGGGCGT
GACCACCATTACCCACCAGCGAAATGAAAAGTAAAAGCTTTCTAGACCAT
BS22008.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:35:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fad2-RA | 1068 | CG7923-PA | 1..1068 | 17..1084 | 5340 | 100 | Plus |
| Desat1-RD | 1152 | CG5887-PD | 347..707 | 276..636 | 350 | 73.1 | Plus |
| Desat1-RB | 1152 | CG5887-PB | 347..707 | 276..636 | 350 | 73.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:35:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fad2-RA | 1312 | CG7923-RA | 4..1075 | 16..1087 | 5360 | 100 | Plus |
| Desat1-RD | 1934 | CG5887-RD | 454..814 | 276..636 | 350 | 73.1 | Plus |
| Desat1-RB | 1978 | CG5887-RB | 498..858 | 276..636 | 350 | 73.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:35:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11023538..11024609 | 16..1087 | 5360 | 100 | Plus |
| 3R | 32079331 | 3R | 12446014..12446314 | 276..576 | 290 | 73.1 | Plus |
| 3R | 32079331 | 3R | 12436761..12436932 | 267..438 | 275 | 77.3 | Plus |
| 3R | 32079331 | 3R | 13283528..13283588 | 812..872 | 185 | 86.9 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:35:43 has no hits.
BS22008.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-14 14:31:52 Download gff for
BS22008.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fad2-RA | 5..1064 | 17..1076 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:03:05 Download gff for
BS22008.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fad2-RA | 5..1064 | 17..1076 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:05:14 Download gff for
BS22008.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fad2-RA | 5..1064 | 17..1076 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:05:14 Download gff for
BS22008.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11023539..11024598 | 17..1076 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:03:05 Download gff for
BS22008.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11016639..11017698 | 17..1076 | 100 | | Plus |
BS22008.pep Sequence
Translation from 16 to 1083
> BS22008.pep
MPRNTKDTTGVLYESDVETVDGGLSTELSNRKTTDGSKLELVWVNIVLFV
ILHISSLYGVWLLFTSATWTTVVLFWPTVVVTILGVSGGAHRLWAHRTFK
ANTPLKLIFLFLNTLAFQDAVYYWARDHRVHHKYTETDADPYNSQRGWFF
AHIGWLCCRKHPEVVEKGKQIDLSDLEADPLIMFQKKYYLLLMPIICFVL
PTVLPMYLWGESLNVSWHVMALLRWCLSLNLIWTVNSSAHMHGMRPYDKN
ICPVDQGFLIFFRVGEGYHNYHHVFPWDYKSAELGKYSQDVTTKFIEFMA
YLGWAYDLKSVSLDLVKQRVQRSGDGSHPVWGWGDKDQLKEDVGVTTITH
QRNEK*
BS22008.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:04:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fad2-PA | 355 | CG7923-PA | 1..355 | 1..355 | 1945 | 100 | Plus |
| Desat1-PD | 383 | CG5887-PD | 35..383 | 6..354 | 1207 | 58.5 | Plus |
| Desat1-PB | 383 | CG5887-PB | 35..383 | 6..354 | 1207 | 58.5 | Plus |
| Desat1-PE | 383 | CG5887-PE | 35..383 | 6..354 | 1207 | 58.5 | Plus |
| Desat1-PC | 383 | CG5887-PC | 35..383 | 6..354 | 1207 | 58.5 | Plus |
