BS22009.complete Sequence
3350 bp assembled on 2011-02-17
GenBank Submission: KX804778
> BS22009.complete
GAAGTTATCAGTCGACATGGCAGCGGATCAGGCCCATTTCCAGCAGCTTC
TGGCCTCCCTCTTGTCCACGGACAACGATGTTCGCCAGCAGGCGGAGGAA
GCATACAACAATCTTTCAAGAGAGCTGAAGGTGACGCATCTCCTGGGCAA
CATCCAAAATGGCCAGCAGTCGGAGGAGGCTCGACAGATGGCCGCCGTGT
TGCTGCGCCGCCTGTTTACCACCGAGTTCTTTGATTTCTACAAAGGGCTT
CCAGCTGAATCCCAGAACCAATTGCTTCAGCAGATCCTTTTGGCCGTGCA
GCAGGAGGTGACGCCGCAGCTGCGTCGCAAGATTTGCGAGGTAGTTGCCG
AGGTGGCCAGGAATCTGATCGACGAGGACTGCAACAACCAGTGGCCCGAC
ATCTTGCAGTTTCTCTTTCAATGCGCTAACTCGCCTACGCCGCAGCTGCA
GGAATCGGCACTGCGGATCTTCTCTAGTGTGCCTTCCATATTTGGAAACC
AGGAAGCTCAGTACATTGATCTGATCAAGCAGATGCTTGCCAAGAGCATG
GACGCTGGATCCGATCCGGAGGTCCGAGTACAGGCCGTGCGAGCCGTCGG
AGCCTTCATCCTCTACCACGACAAGGAGAACGAGACGGCCATCCACAAGC
ACTTCGCTGATATGCTGCCCCGCATGATCCACATCACTGGCGAGACCATC
GAGGCCCAGGATGATCAGAGTCTGCTAAAGCTCCTGATTGAGATGACCGA
GAATTGCCCGAAGTTCCTGCGTCCCCAGCTGGAGTTCATTTTTGAGGTCT
GCATGAAGGTTTTCAGCTCGCAGGACTTTGAGGACAGCTGGCGTCACCTA
GTGTTGGAAGTTATGGTGTCGCTCGCCGAGAACGCCCCGTCGATGATACG
CAAGCGAGCGGACAAGTATATCGTGGCCCTGATCCCGCTGATTCTCCATA
TGATGACGGATTTGGATGATGACGAGAACTGGTCCACCGCCGACGTGGTC
GATGATGACGATCACAGCGACAACAACGTGATCGCCGAGTCCTCGCTGGA
TCGCCTCGCCTGTGGATTGGGAGGAAAGATTGTGCTTCCGCTCGTAATGA
ACGCTCTGCCGGTTATGTTGGGTCATGCCGATTGGAAACATCGCTTCGCA
GCCCTCATGGCCATCTCGGCCATCGGTGAGGGTTGTCACAAGCAGATGGA
AGCCATCCTAGATGAGGTAATGTCCGGAGTCCTGAACTTCCTGAGCGATC
CTCATCCTCGCGTTCGATACGCCGCTTGCAACGCCATTGGCCAAATGTCC
ACCGACTTTGCACAGACCTTCGAGAAGAAGTTCCACAGCCAGGTGATTCC
CGGCCTCTTGTCTCTTTTGGATGACGTGGAAAATCCGCGAGTGCAAGCAC
ACGCAGGTGCCGCTCTGGTGAACTTCAGCGAGGACTGCCCGAAAAATATA
TTGACACGCTACCTGGACGGGATCATGGCCAAGCTGGAGACTATTCTGAA
CTCGAAGTTCAAGGAGCTGGTGGAGAAGGGAAACAAGCTGGTACTGGAGC
AGGTAGTGACGACAATTGCATCGGTTGCAGACACCTGCGAATCGGAATTT
GTGGCCTACTACGATCGCCTAATGCCATGCCTTAAGTTCATCATCCAGAA
CGCCAACTCGGATGATCTCCGCATGCTTCGCGGCAAGACCATTGAATGCG
TGAGCTTGATAGGATTGGCGGTGGGGCGGGAGAAGTTTATTGGTGATGCC
GGAGAAGTCATGGATATGCTGCTGGTCAATCACACCGAGGGGGGGGAACT
AGCTGATGATGATCCGCAGACCTCCTATCTCATCACTGCCTGGGCACGTA
TGTGCAAAATCCTTGGCAAGCAATTTGAGCAATATCTGCCCCTCGTTATG
GGACCAGTGATGCGAACGGCCACCATGAAGCCTGAGGTGGCGATGCTGGA
CAACGACGAGGTGGAGGACATCGACGGTGATGTGGACTGGTCTTTCATTA
ATCTTGGCGAGCAGCAGAACTTCGCCATTCGCACGGCTGGCATGGACGAC
AAGGCTTCGGCCTGTGAGATGCTGGTTTGTTATGCTAGGGAACTAAAGGA
AGGATTTGCCGAATACGCTGAGGACGTGGTGCGTCAAATGCTGCCCATGC
TTAAGTTCTACTTCCACGACGGTGTCCGCACAGCTGCTGCTGAGTCGCTG
CCTTACCTTCTCGACTGCGCAAAAATTAAGGGTCCACAGTATCTGGAGGG
CATGTGGATGTTCATTTGTCCGGAGCTGCTCAAGGTAATCGTCACGGAAC
CGGAGCCAGACGTGCAGTCGGAGCTGCTGAATTCGCTGGCAAAATGCATT
GAGACATTGGGTCCGAATTGCCTTAACGAGGATGCCATGAAACAAGTTCT
CGAGATTATAAACAAGTATGTTCTGGAGCATTTCGAGCGTGCTGACAAGC
GTTTGGCGGCTCGCAATGAGGAAGACTACGACGACGGTGTGGAGGAGGAG
CTGGCCGAGCAGGACGACACAGATGTTTACATCCTTTCCAAAATCGTGGA
CATTACACACGCCCTTTTCCAGACCAACAAGGCTCAGTTCTTACCCGCCT
TTGAACAGGTGGCTCCGCACTTTGTCAAGCTACTGGAGCCCAGCCGACCT
GTAGCTGATCGGCAGTGGGGCTTATGCGTGTTCGATGATCTGATCGAATT
TTGTGGCCCCGCTTGTGCTCCATACCAGCAGATCTTTACGCCAGCCCTCG
TCCAGTACGTGTGCGATAAGGCCCCAGAAGTGCGCCAGGCGGCTGCCTAC
GGATGCGGGGTGCTCGGCCAATTCGCTGGTGAGCAGTTTGCGCATACATG
CGCCCAGATCATTCCACTGCTGGTGCAGGTCATCAACGATCCCAAAGCCC
GCGAAATCGAGAACATCAGTCCGACAGAGAATGCGATCTCGGCGTTTGCT
AAGATCCTCAAGTACAACAACTCGGCGCTGAGCAACGTGGACGAGCTGAT
CGGTGTTTGGTTCTCATGGCTGCCGGTGTCCGAGGATTCGGAAGAAGCCG
CCCACATCTATGGCTACCTATGCGACTTGATTGAAGGCAACCATCCGGTC
ATTCTTGGGGCAAACAACGGCAATCTGCCGCGCATTGTCTCCATCATCGC
TGAATCCTTCTGCACCAAGGTGGTTGAGGCGCAGTCCGCCACCGGCACTC
GTATGCTCACTATCGTCAAACAAGTGGAATCGAATCCGGAGGTAATGGCT
GCTTGTGCCAGCACCTTGAGCCCGGAACAGCAGCAGGCGCTGCAGGATGC
CTACCGGGAGCTGGCAAACGTGGCTCCCGCCTAAAAGCTTTCTAGACCAT
BS22009.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:57:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Karybeta3-RB | 3318 | CG1059-PB | 1..3318 | 17..3334 | 16590 | 100 | Plus |
| Karybeta3-RA | 3318 | CG1059-PA | 1..3318 | 17..3334 | 16590 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:57:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Karybeta3-RB | 4186 | CG1059-RB | 334..3651 | 17..3334 | 16590 | 100 | Plus |
| Karybeta3-RA | 4364 | CG1059-RA | 512..3829 | 17..3334 | 16590 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:57:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4651978..4653336 | 1338..2696 | 6795 | 100 | Plus |
| 3R | 32079331 | 3R | 4650798..4651897 | 247..1346 | 5500 | 100 | Plus |
| 3R | 32079331 | 3R | 4653451..4654089 | 2696..3334 | 3195 | 100 | Plus |
| 3R | 32079331 | 3R | 4650583..4650734 | 96..247 | 760 | 100 | Plus |
| 3R | 32079331 | 3R | 4649687..4649768 | 17..98 | 410 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 12:57:42 has no hits.
BS22009.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-17 13:27:07 Download gff for
BS22009.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Karybeta3-RA | 465..3780 | 17..3332 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:47:23 Download gff for
BS22009.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Karybeta3-RA | 512..3827 | 17..3332 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:08:08 Download gff for
BS22009.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Karybeta3-RA | 512..3827 | 17..3332 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:08:08 Download gff for
BS22009.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4649687..4649767 | 17..97 | 100 | -> | Plus |
| 3R | 4650585..4650734 | 98..247 | 100 | -> | Plus |
| 3R | 4650799..4651893 | 248..1342 | 100 | -> | Plus |
| 3R | 4651983..4653336 | 1343..2696 | 100 | -> | Plus |
| 3R | 4653452..4654087 | 2697..3332 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:47:23 Download gff for
BS22009.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 475409..475489 | 17..97 | 100 | -> | Plus |
| arm_3R | 476307..476456 | 98..247 | 100 | -> | Plus |
| arm_3R | 476521..477615 | 248..1342 | 100 | -> | Plus |
| arm_3R | 477705..479058 | 1343..2696 | 100 | -> | Plus |
| arm_3R | 479174..479809 | 2697..3332 | 100 | | Plus |
BS22009.pep Sequence
Translation from 16 to 3333
> BS22009.pep
MAADQAHFQQLLASLLSTDNDVRQQAEEAYNNLSRELKVTHLLGNIQNGQ
QSEEARQMAAVLLRRLFTTEFFDFYKGLPAESQNQLLQQILLAVQQEVTP
QLRRKICEVVAEVARNLIDEDCNNQWPDILQFLFQCANSPTPQLQESALR
IFSSVPSIFGNQEAQYIDLIKQMLAKSMDAGSDPEVRVQAVRAVGAFILY
HDKENETAIHKHFADMLPRMIHITGETIEAQDDQSLLKLLIEMTENCPKF
LRPQLEFIFEVCMKVFSSQDFEDSWRHLVLEVMVSLAENAPSMIRKRADK
YIVALIPLILHMMTDLDDDENWSTADVVDDDDHSDNNVIAESSLDRLACG
LGGKIVLPLVMNALPVMLGHADWKHRFAALMAISAIGEGCHKQMEAILDE
VMSGVLNFLSDPHPRVRYAACNAIGQMSTDFAQTFEKKFHSQVIPGLLSL
LDDVENPRVQAHAGAALVNFSEDCPKNILTRYLDGIMAKLETILNSKFKE
LVEKGNKLVLEQVVTTIASVADTCESEFVAYYDRLMPCLKFIIQNANSDD
LRMLRGKTIECVSLIGLAVGREKFIGDAGEVMDMLLVNHTEGGELADDDP
QTSYLITAWARMCKILGKQFEQYLPLVMGPVMRTATMKPEVAMLDNDEVE
DIDGDVDWSFINLGEQQNFAIRTAGMDDKASACEMLVCYARELKEGFAEY
AEDVVRQMLPMLKFYFHDGVRTAAAESLPYLLDCAKIKGPQYLEGMWMFI
CPELLKVIVTEPEPDVQSELLNSLAKCIETLGPNCLNEDAMKQVLEIINK
YVLEHFERADKRLAARNEEDYDDGVEEELAEQDDTDVYILSKIVDITHAL
FQTNKAQFLPAFEQVAPHFVKLLEPSRPVADRQWGLCVFDDLIEFCGPAC
APYQQIFTPALVQYVCDKAPEVRQAAAYGCGVLGQFAGEQFAHTCAQIIP
LLVQVINDPKAREIENISPTENAISAFAKILKYNNSALSNVDELIGVWFS
WLPVSEDSEEAAHIYGYLCDLIEGNHPVILGANNGNLPRIVSIIAESFCT
KVVEAQSATGTRMLTIVKQVESNPEVMAACASTLSPEQQQALQDAYRELA
NVAPA*
BS22009.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:04:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Karybeta3-PB | 1105 | CG1059-PB | 1..1105 | 1..1105 | 5703 | 100 | Plus |
| Karybeta3-PA | 1105 | CG1059-PA | 1..1105 | 1..1105 | 5703 | 100 | Plus |
| CG32164-PA | 1079 | CG32164-PA | 2..1071 | 5..1087 | 353 | 19.9 | Plus |
| CG32164-PB | 1080 | CG32164-PB | 2..1072 | 5..1087 | 347 | 20.2 | Plus |
| CG32165-PA | 1080 | CG32165-PA | 2..1072 | 5..1087 | 338 | 19.7 | Plus |
