Clone BS22013 Report

Search the DGRC for BS22013

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:220
Well:13
Vector:pDNR-Dual
Associated Gene/TranscriptCG5084-RA
Protein status:BS22013.pep: gold
Sequenced Size:737

Clone Sequence Records

BS22013.complete Sequence

737 bp assembled on 2011-01-25

GenBank Submission: KX801648

> BS22013.complete
GAAGTTATCAGTCGACATGCAGCTTTTCACACGAGTTATCCTGTTGGCCG
TGACCATTTTCAGCGTCAGTGCCGTGCCGCGTTTTGGAGAAGATATTGGT
CTGGAGGAGGTCCTATTCCGCATGGTCCTTGGTGAGGCTGAGGGTCGAGG
TCTGACTCCTGCTGCCCAGACTTGTGCCAACATCTACCTGAACACCACCC
AGAAGAACGGCGATAAGTTGGCCAATGCCACCAATGCTTGCGAGGAGGCA
GCCAATCGCACCAATGTCGCCTACACCCAGACCAGCAACTCCACCATCAA
CCAGATCCGTCTCCAGTTGTTGACCCTGGAGCAGAACCTGCAGCTGTGCC
GCAACGAGACCGATTCGGCTATTTTCCTGAACTGCACTGTGTCCACTTTC
GACAAGAACCTCCAGCTGCTGGACACCTCCAACTCGCAGGCCTACCGTGC
TCAGTCCCAGTTCGTTTCCAATGCCACTCAGATGAATGCCGAGAAATCGA
ACTGCATCAGCTCCGCTGTTAGCGAGGCCAAGGTTCAGTCCATCCAGGCG
GCCAACGACTTTAATTCGTGTCTGGACAAGATCCCAGCCCAGCGTGAGGT
GCCACAAAAGATGGAGCAGCAGCTGAGAGAGCAGCAGCAGGAGAAGCCCA
CCCAGATAACCAAAGAGCAAGTGTCTGCGAAGCCACAGCTGATGTTCGAA
GATCTGCCTTTGACCAACTAAAAGCTTTCTAGACCAT

BS22013.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:15:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG5084-RB 705 CG5084-PB 1..705 17..721 3525 100 Plus
CG5084-RA 705 CG5084-PA 1..705 17..721 3525 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:15:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG5084-RB 1182 CG5084-RB 27..733 15..721 3535 100 Plus
CG5084-RA 773 CG5084-RA 27..733 15..721 3535 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:15:34
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18019046..18019378 65..397 1665 100 Plus
2R 25286936 2R 18019439..18019762 398..721 1620 100 Plus
2R 25286936 2R 18018691..18018746 15..70 265 98.2 Plus
Blast to na_te.dros performed 2014-11-26 15:15:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2319..2387 602..670 110 65.7 Plus

BS22013.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:17:17 Download gff for BS22013.complete
Subject Subject Range Query Range Percent Splice Strand
CG5084-RA 28..730 17..719 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:50:23 Download gff for BS22013.complete
Subject Subject Range Query Range Percent Splice Strand
CG5084-RA 29..731 17..719 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:09:45 Download gff for BS22013.complete
Subject Subject Range Query Range Percent Splice Strand
CG5084-RA 29..731 17..719 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:09:45 Download gff for BS22013.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18019046..18019378 65..397 100 -> Plus
2R 18019439..18019760 398..719 100   Plus
2R 18018693..18018740 17..64 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:50:23 Download gff for BS22013.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13906198..13906245 17..64 100 -> Plus
arm_2R 13906551..13906883 65..397 100 -> Plus
arm_2R 13906944..13907265 398..719 100   Plus

BS22013.pep Sequence

Translation from 16 to 720

> BS22013.pep
MQLFTRVILLAVTIFSVSAVPRFGEDIGLEEVLFRMVLGEAEGRGLTPAA
QTCANIYLNTTQKNGDKLANATNACEEAANRTNVAYTQTSNSTINQIRLQ
LLTLEQNLQLCRNETDSAIFLNCTVSTFDKNLQLLDTSNSQAYRAQSQFV
SNATQMNAEKSNCISSAVSEAKVQSIQAANDFNSCLDKIPAQREVPQKME
QQLREQQQEKPTQITKEQVSAKPQLMFEDLPLTN*

BS22013.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:10:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG5084-PB 234 CG5084-PB 1..234 1..234 1169 100 Plus
CG5084-PA 234 CG5084-PA 1..234 1..234 1169 100 Plus