BS22027.complete Sequence
1337 bp assembled on 2011-01-31
GenBank Submission: KX802891
> BS22027.complete
GAAGTTATCAGTCGACATGAAATCGCGGAAGCTGCCAAAGGGCTTCGTGC
TTTGTGGCCTCAACTGTTTGACCTTCGTCTACTTCCCGCTCGTCCTGCCA
ATCCTGCGATGCTCGGCCGGAGCGGCGTCGTCGGCCAGCGGCGGTGGCTC
AAAGACCGCCGACGACTTCGACTTCCGGATGCAGCGCGTGCGGAATGTCC
TGAAGGAAGTGCCCCTCATCGACGGACACAACGATCTGCCGTGGAATATT
CGCAAGTTTCTGAAGAACCAACTGAAGGACTTCCACTTTGGCGGCGATCT
GCGGGAACTGGCTCCCTGGTCGTCGAGTGCCTGGAGTCACACAGACCTGC
GCCGCCTGAAGGAGGGCATGGTCTCCGCCCAGTTCTGGTCCGCCTATGCC
CCCTGCTCATCCCAACATCTGGATGCAGTGCAGCTGACGCTGGAGCAGAT
CGACCTGATTCGTCGACTTGTTCAGCTCTATCCGCATCACATGGCGCTGG
TCACGACTGCTTCTGGAATCGAGCAGACGCACCGGACTGGCAAGATCGCC
AGTCTCATTGGCGTGGAGGGCGGACATGCCATCGGCACCAGTCTGAGTGT
CCTGCGAATGTTCTACCAACTGGGCGCCAGATACTTGACTCTCACACACA
CCTGCAATACACCTTGGGCGGACTGCTGCAAAGTTGACGAACCAGGGAAG
TACCCGCACATAGGCGGTCTTTCGCAGTTCGGCAAGCTGGTGGTCAAGGA
GATGAACCGACTGGGGATGATAGTGGATCTGTCTCACGTCTCGGTGCCCA
CGATGCTGGATGCCCTGGCCGCCTCGAGGGCGCCGTTAATATTCTCGCAC
TCCTCGGCGCACGCCATCTGCAATAGTTCCCGCAACGTTCCCGATCATGT
CCTGCAACGCATTGCAATAAACGGCGGTCTGGTTATGGTGGCCTTTTATC
CGCATTTCGTCAGCTGCTCGGGACAGGCGACATTGCACGATGTTGTGGCG
CATATCAACCACATAAGGGAGGTGGCCGGCATCGATCATGTTGGCATTGG
AGCTGGCTACGACGGAGTCAACTTAGTGCCCAAAGGACTGGAGGATGTGT
CCAAATATCCGCATCTTTTTGCTGCCCTGCTCGAGTCTGATAAATGGTCG
GAGGAGGATATTGCCAAGTTGGCTGGCAGGAATCTAATACGTGTATTCAA
GGAAGTCGAAGCGGTGCGCGATCAAATGGAACTTTTGCGAGTGGCACCCA
TTGATCAGTCAATTCCAGCCGAAGACATTATGGGCCGATCCTATTGTCGT
TATCAAGGACCAAGAACGTGAAAGCTTTCTAGACCAT
BS22027.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:45:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6154-RD | 1305 | CG6154-PD | 1..1305 | 17..1321 | 6525 | 100 | Plus |
| CG6154-RC | 1305 | CG6154-PC | 1..1305 | 17..1321 | 6525 | 100 | Plus |
| CG42750-RB | 3207 | CG42750-PB | 2111..2357 | 207..453 | 245 | 73.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:46:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6154-RD | 3875 | CG6154-RD | 404..1708 | 17..1321 | 6525 | 100 | Plus |
| CG6154-RC | 1547 | CG6154-RC | 97..1401 | 17..1321 | 6525 | 100 | Plus |
| CG42750-RB | 6066 | CG42750-RB | 3962..4208 | 207..453 | 245 | 73.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:45:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26268452..26269102 | 17..667 | 3255 | 100 | Plus |
| 3R | 32079331 | 3R | 26269308..26269487 | 735..914 | 900 | 100 | Plus |
| 3R | 32079331 | 3R | 26269950..26270091 | 1075..1216 | 710 | 100 | Plus |
| 3R | 32079331 | 3R | 26274775..26274883 | 1213..1321 | 545 | 100 | Plus |
| 3R | 32079331 | 3R | 26269565..26269649 | 914..998 | 425 | 100 | Plus |
| 3R | 32079331 | 3R | 26269739..26269815 | 998..1074 | 385 | 100 | Plus |
| 3R | 32079331 | 3R | 26269173..26269243 | 666..736 | 355 | 100 | Plus |
| 2L | 23513712 | 2L | 18192994..18193067 | 453..380 | 205 | 85.1 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:45:58 has no hits.
BS22027.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-14 14:31:53 Download gff for
BS22027.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6154-RD | 404..1707 | 17..1320 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:33:21 Download gff for
BS22027.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6154-RC | 97..1400 | 17..1320 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:09:01 Download gff for
BS22027.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6154-RC | 97..1400 | 17..1320 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:09:01 Download gff for
BS22027.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26268452..26269101 | 17..666 | 100 | -> | Plus |
| 3R | 26269174..26269243 | 667..736 | 100 | -> | Plus |
| 3R | 26269310..26269486 | 737..913 | 100 | -> | Plus |
| 3R | 26269565..26269649 | 914..998 | 100 | -> | Plus |
| 3R | 26269740..26269815 | 999..1074 | 100 | -> | Plus |
| 3R | 26269950..26270088 | 1075..1213 | 100 | -> | Plus |
| 3R | 26274776..26274882 | 1214..1320 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:33:21 Download gff for
BS22027.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22095672..22095810 | 1075..1213 | 100 | -> | Plus |
| arm_3R | 22100498..22100604 | 1214..1320 | 100 | | Plus |
| arm_3R | 22094174..22094823 | 17..666 | 100 | -> | Plus |
| arm_3R | 22094896..22094965 | 667..736 | 100 | -> | Plus |
| arm_3R | 22095032..22095208 | 737..913 | 100 | -> | Plus |
| arm_3R | 22095287..22095371 | 914..998 | 100 | -> | Plus |
| arm_3R | 22095462..22095537 | 999..1074 | 100 | -> | Plus |
BS22027.pep Sequence
Translation from 16 to 1320
> BS22027.pep
MKSRKLPKGFVLCGLNCLTFVYFPLVLPILRCSAGAASSASGGGSKTADD
FDFRMQRVRNVLKEVPLIDGHNDLPWNIRKFLKNQLKDFHFGGDLRELAP
WSSSAWSHTDLRRLKEGMVSAQFWSAYAPCSSQHLDAVQLTLEQIDLIRR
LVQLYPHHMALVTTASGIEQTHRTGKIASLIGVEGGHAIGTSLSVLRMFY
QLGARYLTLTHTCNTPWADCCKVDEPGKYPHIGGLSQFGKLVVKEMNRLG
MIVDLSHVSVPTMLDALAASRAPLIFSHSSAHAICNSSRNVPDHVLQRIA
INGGLVMVAFYPHFVSCSGQATLHDVVAHINHIREVAGIDHVGIGAGYDG
VNLVPKGLEDVSKYPHLFAALLESDKWSEEDIAKLAGRNLIRVFKEVEAV
RDQMELLRVAPIDQSIPAEDIMGRSYCRYQGPRT*
BS22027.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:04:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6154-PD | 434 | CG6154-PD | 1..434 | 1..434 | 2279 | 100 | Plus |
| CG6154-PC | 434 | CG6154-PC | 1..434 | 1..434 | 2279 | 100 | Plus |
| CG42750-PC | 1067 | CG42750-PC | 672..1051 | 35..413 | 1138 | 57.7 | Plus |
| CG42750-PB | 1068 | CG42750-PB | 673..1052 | 35..413 | 1138 | 57.7 | Plus |
| CG44837-PE | 801 | CG44837-PE | 434..790 | 54..417 | 1047 | 54.1 | Plus |
