Clone BS22057 Report

Search the DGRC for BS22057

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:220
Well:57
Vector:pDNR-Dual
Associated Gene/TranscriptRpI12-RA
Protein status:BS22057.pep: full length peptide match
Sequenced Size:395

Clone Sequence Records

BS22057.complete Sequence

395 bp assembled on 2011-01-31

GenBank Submission: KX804361

> BS22057.complete
GAAGTTATCAGTCGACATGGATATTTTTTCCAATTGTCCGGGCTTTTGCC
CCTCCTGCGGCTCCATTCTGCCCGAGCTTCAAGTCAAGGGCAATGTGATT
TGCTACAACTGCAAGAAGGAGTTTCAGCCAGATGTTTACAGCGGCGAGAA
GTCCGAGTTTACCATACACTTCAACACCTACGATCCCAGCAAGGTGTTCA
ACAGGACGAAAAGGGAGTCGGAATCGGACGCGGATGGCCCCGTTGTGGAG
AGGAAGTGTCCCAAGTGCAACCACGACAAGATGTCCTATGCCACCCTGCA
GCTTCGATCGGCGGACGAAGGCCAGACGGTGTTCTTTACCTGCCTTAAGT
GCAAATTCAAAGAATCCGAAAACTCTTAGAAGCTTTCTAGACCAT

BS22057.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:46:20
Subject Length Description Subject Range Query Range Score Percent Strand
RpI12-RA 363 CG13418-PA 1..363 17..379 1815 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:46:21
Subject Length Description Subject Range Query Range Score Percent Strand
RpI12-RA 530 CG13418-RA 81..444 16..379 1820 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:46:18
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21777378..21777598 354..134 1105 100 Minus
3R 32079331 3R 21777649..21777767 134..16 595 100 Minus
Blast to na_te.dros performed on 2014-11-27 00:46:19 has no hits.

BS22057.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-14 14:31:54 Download gff for BS22057.complete
Subject Subject Range Query Range Percent Splice Strand
RpI12-RA 23..385 17..379 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:33:31 Download gff for BS22057.complete
Subject Subject Range Query Range Percent Splice Strand
RpI12-RA 82..444 17..379 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:09:08 Download gff for BS22057.complete
Subject Subject Range Query Range Percent Splice Strand
RpI12-RA 82..444 17..379 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:09:08 Download gff for BS22057.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21777289..21777313 355..379 100 <- Minus
3R 21777378..21777597 135..354 100 <- Minus
3R 21777649..21777766 17..134 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:33:31 Download gff for BS22057.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17603100..17603319 135..354 100 <- Minus
arm_3R 17603371..17603488 17..134 100   Minus
arm_3R 17603011..17603035 355..379 100 <- Minus

BS22057.pep Sequence

Translation from 16 to 378

> BS22057.pep
MDIFSNCPGFCPSCGSILPELQVKGNVICYNCKKEFQPDVYSGEKSEFTI
HFNTYDPSKVFNRTKRESESDADGPVVERKCPKCNHDKMSYATLQLRSAD
EGQTVFFTCLKCKFKESENS*

BS22057.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:05:00
Subject Length Description Subject Range Query Range Score Percent Strand
RpI12-PA 120 CG13418-PA 1..120 1..120 662 100 Plus